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== Notes == | == Notes == | ||
Revision as of 12:41, 16 September 2010
Notes
- these instructions are periodically updated to include items needed for older/newer versions of Linux. They are marked like this: (SL4.2+) means Scientific Linux 4.2 and newer; (SL4 is equivalent to FC3). (FC5 only) means Fedora Core 5; etc.
- obsolete items are marked by the "#" sign at the beginning of the line and sometimes have a comment about the reason for removal.
- typically, we do not "upgrade" machines using the Red Hat "upgrade" function. Instead, we save critical files from the old installation and do a "fresh install" from scratch
Preparation
Running SL installer
<strong>For the case of one disk only</strong>: - no "/boot" filesystem, - allocate at least 20 GBytes for "/" filesystem (primary partition, hda1) - allocate at least 8 GBytes for swap (primary partition, hda2) - allocate the rest as /home1 and /data (primary partitions hda3 and hda4)
<strong>For the case of two or more disks:</strong> - If there are already some partitions on the disks, consider DELETING them all - Click New, select software RAID for /dev/sda, 20000MB (20 GB) and Force primary partition - Same as above for /dev/sdb - Click RAID, select create a RAID device /dev/md0, mount point /, RAID Level1 (mirror) - Repeat for the swap partition (/dev/md1, make it at least 8 Gbytes) - Leave the rest of the disks free. The other RAID partitions will be created AFTER installation.
- enter the root password for the new system
- continue with installation, at the very end, the system will ask you to reboot
- boot newly installed system and answer the few questions for SL5
- Firewall: Leave it disabled; SELinux: choose Disabled; KDump: Leave it disabled; Date and Time: Leave kickstart defaults (should be NTP using TRIUMF time servers)
- Create user: not necessary if you are using NIS; Sound card: ignore possibly.
- The system will reboot again.
- Login from the console, restore the SSH keys from backup (/etc/ssh/*key*), "service sshd restart"
- ssh into the new machine as root
- If you created only one mirror partitions, it is time to create the others: Create one 60 GB primary partition on each disks for /home1 and another one using the remainder of space.
Post installation
<strong>fdisk /dev/sda</strong> ... Command (m for help): <strong>n</strong> Command action ... <strong>p</strong> Partition number ... <strong>2, 3 or 4</strong> according to what has been defined before First cylinder ... default Last cylinder ... <strong>+60000M</strong> or default Command action ... t Partition number ... : <strong>2, 3 or 4</strong> according to what has been defined before Hex code ... : fd if you intend to include this into a RAID array Command action ... <strong>p to check all is correct</strong> Command (m for help): <strong>w .... </strong>The new table will be used at the next reboot.<strong> </strong><strong><strong>fdisk /dev/sdb </strong></strong>and repeat as above <strong><em>- Reboot the machine --- </em></strong>Check the newly created partitions: <strong>fdisk -l /dev/sda; fdisk -l /dev/sdb mdadm --create /dev/md2 -a yes -l 1 -n /dev/sda3 /dev/sdb2</strong> Check the progress of building the RAID with <strong>more /proc/mdstat </strong>When finished:<strong> mkfs -j -L /home1 /dev/md2; tune2fs -i 0 -c 0 /dev/md2; mkdir /home1</strong> Add a line to /etc/fstab: <strong>/dev/md2 /home1 ext3 defaults 1 2</strong> Finally mount this new partition: <strong>mount -a</strong> Repeat from <strong>mkfs</strong> for each of the data partitions.
- At this point you should have these disk partitions (single-disk in parenthesis)
- /dev/md0 (/dev/hda1) is the system partition, 20 GBytes or more
- /dev/md1 (/dev/hda2) is the swap partition, 8 GBytes or more
- /dev/md2 (/dev/hda3) is the /home1 partition, 60 GBytes or more
- /dev/md3 or /dev/sda4 (/dev/hda4), etc are the data partitions
- (not needed for SL5.5 kickstart) check that /etc/ssh/ssh_config contains:
ForwardX11 yes ForwardX11Trusted yes
- (on midm15/midm9b/midm20 only) install correct ethernet driver eepro100 not e100
- restore /home (non-NIS) or /home1 (NIS) and other
required user directories from backup.
(Can use /triumfcs/trshare/midas/Disks/rsync_back.csh ). - if needed, for non-NIS only, make a softlink for /home1 (NIS automounts /home).
ln -s /home /home1 - Restore users accounts (non-NIS and NIS master only):
- edit /etc/passwd and /etc/shadow
Append users' login info to the end of these files from the backup versions. - edit ~root/.forward
(create file if not present, or restore from backup) In file add email address of the person(s) to receive root's email - always include Konstantin - olchansk@triumf.ca) - cleanup network setup (or postfix would not work):
- check that /etc/sysconfig/network has the entry "HOSTNAME=xxx.triumf.ca" (fully qualified domain name)
- check that /etc/hosts has only the entry for "localhost".
- ###run "system-config-authentication", check "select NIS support", click on "configure NIS", set NIS domain, leave NIS server field blank.
- run "authconfig --enablenis --nisdomain LADD-NIS --update"
- run "sed 's/^hosts:.*/hosts: files dns/' -i /etc/nsswitch.conf" (to undo a mistake from authconfig)
- On the master NIS node (ladd00), add this new node to /etc/netgroup, and update NIS maps (cd /var/yp; make)
- (if needed) To setup NIS slave server:
- check if /usr/lib64/yp exists. If not, run "yum install ypserv"
-
/usr/lib64/yp/ypinit -s ladd00 (/usr/lib/yp/ypinit on 32-bit machines)
-
chkconfig ypserv on
-
service ypserv start
-
service ypbind restart
-
add the new machine to /var/yp/ypservers on the NIS master, run "make -C /var/yp" and also "cd /var/yp; yppush -h newmachine ypservers"
-
If using securenets on the NIS master, remember to copy this file to the new slave server in /var/yp
- (if NIS master or standalone) check /etc/auto.* against backups, particularly auto.master if NIS master
- (if needed) add "+auto.master" at the end of /etc/auto.master
- restart autofs to use the newly configured NIS maps: "service autofs restart"
- Verify time and date configuration. Run "ntpstat", it should say "synchronised to NTP server (142.90.x.y). If not, run "system-config-time", check "use network time", enter NTP servers: time1, time2, time3
- (If needed) enable automatic system updates: run "/triumfcs/trshare/olchansk/linux/triumf-update/yum-setup.perl -o"
- (If needed) enable automatic kernel updates: run "/triumfcs/trshare/olchansk/linux/triumf-update/yum-setup.perl -k -o"
- disable unwanted services, use "chkconfig --list | grep on | sort" to see what is enabled.
SL4- disable unnecessary services:
(only if amanda is not used) -> chkconfig --level 12345 xinetd off chkconfig --level 12345 canna off chkconfig --level 12345 FreeWnn off chkconfig --level 12345 hpoj off chkconfig --level 12345 ip6tables off chkconfig --level 12345 iptables off chkconfig --level 12345 isdn off chkconfig --level 12345 pcmcia off chkconfig --level 12345 rhnsd off chkconfig --level 12345 spamassassin off chkconfig --level 12345 bluetooth off chkconfig --level 12345 apmd off chkconfig --level 12345 iiim off chkconfig --level 12345 fenced off chkconfig --level 12345 ccsd off chkconfig --level 12345 cpuspeed off chkconfig --level 12345 pcp off chkconfig --level 12345 pmie off chkconfig --level 12345 yum-updatesd off chkconfig --level 12345 clvmd off chkconfig --level 12345 cman off chkconfig --level 12345 lvm2-monitor off chkconfig --level 12345 modclusterd off chkconfig --level 12345 yum-updateonboot off chkconfig --level 12345 cmirror off chkconfig --level 12345 lock_gulmd off chkconfig --level 12345 firstboot off chkconfig --level 12345 ricci off chkconfig --level 12345 gfs off chkconfig --level 12345 scsi_reserve off chkconfig --level 12345 openibd off chkconfig --level 12345 arptables_jf off chkconfig --level 12345 auditd off chkconfig --level 12345 avahi-daemon off chkconfig --level 12345 hplip off chkconfig --level 12345 iscsi off chkconfig --level 12345 iscsid off chkconfig --level 12345 mcstrans off chkconfig --level 12345 pcscd off chkconfig --level 12345 restorecond off chkconfig --level 12345 setroubleshoot off chkconfig --level 12345 xend off chkconfig --level 12345 xendomains off chkconfig --level 12345 kudzu off #chkconfig --level 12345 yum-cron off
- configure hardware sensors:
- run "yum install lm_sensors"
- run "sensors-detect", accept default answer to all questions (press ENTER)
-
run "service lm_sensors restart" to load the kernel modules
-
run "sensors", observe the sensors data
-
if sensors reports "General parse error", do "cp /triumfcs/trshare/olchansk/linux/lm_sensors/lm_sensors-3.0.1/prog/sensors/sensors /usr/bin/sensors" and try again.
- ssh root@localhost, ctrl-C
- scp root@ladd00:/root/authorized_keys ~root/.ssh/
- Use "system-config-users" to add local user accounts
- NIS: check user accounts: run "ypcat -k passwd"
- to enable NFS:
edit /etc/hosts.allow, add or uncomment "mountd: 142.90.0.0/255.255.0.0" create /etc/exports, e.g. "/home1 @daqmachines(rw,no_root_squash,async)" chkconfig nfs on chkconfig nfslock on service nfs restart
- mkdir -p /pnfs/triumf.ca
- edit /etc/rc.local, add to the end of file: "mount -o intr,rw,noac,hard,nfsvers=2 trdata00:/pnfsdoor /pnfs/triumf.ca"
- . /etc/rc.local
- (not needed for SL5.5 kickstart) erase unwanted packages: yum erase logwatch mailman mrtg inn inn-devel cyrus-imapd cyrus-imapd-devel cyrus-imapd-murder cyrus-imapd-nntp webalizer squirrelmail rhn-applet yumex-applet apt-autoupdate SL_enable_serialconsole tog-pegasus kernel-largesmp kernel-hugemem kernel-largesmp-devel spamassassin slrn-pull openafs kernel-module-openafs openafs-debug openafs-devel openafs-kernel-source kernel-largesmp kernel-hugemem kernel-hugemem-devel xen kernel-xen bash-completion
- install xemacs (from EPEL): yum install "xemacs*"
- install ganglia:
scp ladd00:/etc/gmond.conf /etc/gmond.conf yum install ganglia ganglia-gmond chkconfig gmond on service gmond restart
- install misc stuff
cd /triumfcs/trshare/olchansk/linux/misc-rpms rpm -vh --install triumf-ko-ganglia-* rpm -vh --install emailonreboot-* rpm -vh --install monitor_nfs-* rpm -vh --install /triumfcs/trshare/olchansk/public_html/diskscrub/download/diskscrub*
- install memtest86: "yum install memtest86+", "ls -1 /boot/* | grep memtest" to find out the name of the memtest boot file to use on the "kernel" line of the incantation to be added at the end of /boot/grub/grub.conf:
section bbb
section ccc
Enable NFS
Enable AMANDA backups
AMANDA backups are already enabled by TRIUMF kickstart installs. For non-kickstart installation, follow instructions at [http://amanda/~amanda], or look at "/triumfcs/trshare/olchansk/linux/amanda/amanda-enable.perl". As final step, use [https://helpdesk.triumf.ca] to contact TRIUMF CS to add this new machine to the amanda backup list.
Enable DCACHE
section ddd
cat >> /boot/grub/grub.conf title memtest root (hd0,0) kernel /boot/memtest86+-1.65
- yum install tkcvs
- install node monitoring
cd /triumfcs/trshare/olchansk/linux/misc-rpms rpm -vh --install triumf_nodeinfo.noarch.rpm /usr/sbin/sendnodeinfo.perl --config ladd00:8600 edit /etc/nodeinfo /usr/sbin/sendnodeinfo.perl ladd00:8600
- (before FC5) remove the fancy screen savers
rm -f /usr/X11R6/lib/xscreensaver/* rm -f /usr/bin/*.kss
- chmod a+r /var/log/messages
- (before FC5) edit /etc/updatedb.conf, set "DAILY_UPDATE=yes"
- cd ~; yum update
- install xpdf (from EPEL, on SL5): yum install xpdf
- (if desired) install all missing packages: /triumfcs/trshare/olchansk/linux/triumf-update/yum-everything.perl
- (SL5) If yum complains about unsigned java packages: cd ~; rpm -vh --upgrade /triumfcs/mirror/scientificlinux.org/5x/i386/updates/security/jdk*rpm /triumfcs/mirror/scientificlinux.org/5x/i386/updates/security/java*rpm
- (SL5.5 or newer) enable raid1 bitmap files, for each /dev/mdX device, run "mdadm --grow --bitmap=internal /dev/mdX". In /proc/mdstat, verify that there is a "bitmap" entry. This will fail if the md device reconstruction is in progress.
- edit /boot/grub/grub.conf, remove the "quiet" and "rhgb" options
- edit /boot/grub/grub.conf, comment out (with "#") the "splashimage=" line
- check that GRUB boot loader is installed on all system disks: dd if=/dev/sda bs=1 count=1024 2>&1 | strings | grep GRUB
- if GRUB is not installed, (i.e. on the 2nd disk of machines with mirrored system disk), (but check that /dev/sdb is the right disk):
Install packages needed for ROOT and MIDAS DAQ
yum install giflib.i386 giflib.x86_64 compat-libf2c-34.i386 mysql-devel sysstat "libusb-devel*" unixODBC-devel postgresql-devel libxml2-devel libXpm-devel libgfortran libstdc++-devel.i386 git
Section eee
Section fff
Configure GRUB boot loader
# grub grub> device (hd0) /dev/sdb grub> root (hd0,0) grub> setup (hd0)
Configure X11 graphics
Special settings for DAQ
- add the following at the end of /etc/X11/xorg.conf. The enables Ctrl-Alt-KP-/ and Ctrl-Alt-KP-* to unlock the keyboard after Altera Quartus crash:
Section "ServerFlags" Option "AllowDeactivateGrabs" "true" Option "AllowClosedownGrabs" "true" EndSection
Install NVIDIA drivers
- yum install nvidia-x11-drv kmod-nvidia (if it fails due to conflict with module-init-tools, run "yum --disablerepo \* --enablerepo elrepo update module-init-tools")
- mv /etc/X11/xorg.conf /etc/X11/xorg.conf-xxx
- nvidia-xconfig
- /dev/MAKEDEV nvidia
- restart the X11 server (Ctrl-Alt-Backspace or killall gdm-binary)
- observe that X11 server restarts using the NVIDIA driver (big NVIDIA logo on startup)
- if needed, login as root and run "nvidia-settings" to setup dual-screen configuration, etc
Manual selection of monitor, video mode and resolution
Automatic selection of monitor and video mode usually works. When it does not, configure it manualls:
- physically go to the computer
- login as root
- run "system-config-display".
- In the "hardware" tab, select monitor type: "generic LCD 1280x1024" or "generic LCD 1600x1200".
- In the "settings" tab, select "1280x1024" or "1600x1200" and "Thousands of colors".
- Press "ok", the display settings application should close.
- Logout, the new login window should use the new settings.
Finish installation
- logout and reboot the computer to have all the changes to take effect