BNMR: Adding a new mode

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Introduction

Adding a new experimental (PPG) mode takes several steps. First, answer these questions:

Mode Decision Table

spacerspacerspacer Can an existing ppg script be used for the new mode?
Yes	spacerspacerspacer No spacerspacerspacer
Can you just add parameter(s) to an existing mode?	new mode and new ppg script
Yes No new mode not needed make a new dummy mode, where a different parameter set is displayed use an existing PPG script

Many of the existing modes are actually "dummy modes", as they redirect to an actual PPG mode for which a PPG script exists. Examples of dummy modes are 1n (NaCell scan), and 1c (Camp scan), because they both use the PPG script for 1f (frequency scan).

Decide whether the new mode (or new dummy mode) is Type 1, Type 2 or combination. The combination modes defined so far are named as Type 1 because they save the histograms like the Type 1 modes, not the Type 2 modes. Type 2 modes store the histograms in memory allocated by frontend (Histogram Memory), then save the histograms directly to .msr (MUD) files. Type 1 modes send out the scaler data at each scan value which are saved into a .mid (midas) file. The midas file is then converted to MUD format.

Run parameters in the ODB

Excluding the PSM parameters, all run parameters used by rf_config and the frontend are those in /Equipment/FIFO_acq/frontend/input and /Equipment/FIFO_acq/frontend/hardware. These parameters are used by all modes (i.e. some parameters are common to some modes, others are unique to one mode). This had the problem that parameters changed for a particular mode, then were set wrongly for another mode. It was not possible to change mode and reliably return to a mode and have the parameters unchanged since the last time it was run. Also, some of the run parameters were presented to the user with a different name for different modes, e.g. the parameter "dwell time" could be presented as "bin width", "rf on time" etc.

To get away from this problem, #mode parameters were introduced, unique to each mode. These keep the value from the last run (and enable tunes to be saved and loaded for a particular mode). The name of the run parameter can be different from that of the input parameter. At the begin-of-run, the mode parameters are copied to the parameters area (by subroutines in update_run_parameters.c called by rf_config) /Equipment/FIFO_acq/frontend/input and /Equipment/FIFO_acq/frontend/hardware. The mode parameters are also saved into the #Tunes directory, so that when this mode is selected in the future, the saved parameters can be loaded automatically.

PSM parameters (in ODB subtree /Equipment/FIFO_acq/frontend/hardware/PSM) are treated differently. These are only required for modes that use RF, and were never presented with different names. For modes that use RF, all the PSM parameters are also saved in the #Tunes directory when the run starts. When the user changes mode to a mode that uses the PSM, the saved PSM parameters are loaded in addition to the saved mode parameters.

Adding a new parameter

To add a new parameter that does not yet exist in odb, add it in the parameters area, either /Equipment/FIFO_acq/frontend/input or /Equipment/FIFO_acq/frontend/hardware. Modes that use the new parameters will need this parameters added to the list of #Mode Parameters for that mode. See instructions for adding a mode parameter to an existing mode under #Mode Parameters. Note that adding parameters under /Equipment/FIFO_acq will require making a new experim.h (see #experim) and recompiling clients that include experim.h.

Modify rf_config

All new modes must be added to rf_config.c and update_run_parameters.c - see #mode parameters.

New modes that require new ppg scripts must be also added type1_compute.c or type2_compute.c rf_config.c has to be able to deal with new dummy modes. This may include a direct direction to the actual PPG mode in rf_config.c , or the mode may be directed in type1_compute.c or type2_compute.c after setting some variables. In this case a function e.g. compute_2x (where "2x" is the name of the new mode) would be required.

Instructions for making a new ppg script haven't yet been written. Basically, start with an existing PPG template and modify it. Be sure to make a timing diagram.

After making all the changes to the ODB and the rf_config files, save the odb Template:Odbedit cmd, and create a new experim.h using Template:Odbedit cmd, e.g.

[bnqr@isdaq01]$ cd ~/online/bnqr
[bnqr@isdaq01 bnqr]$ odbedit
[local:bnqr:Stopped]/>save bnqr.odb
[local:bnqr:Stopped]/>make
Analyzer "Analyzer" not found in ODB, skipping analyzer parameters.
"experim.h" has been written to /home/bnqr/vmic_online/bnqr
[local:bnqr:Stopped]/>quit

Note that the file experim.h must be created in directory /home/bnm[q]r/online/bnm[q]r or equivalent as in example above (online is linked to vmic_online).

Then rebuild rf_config

[bnqr@isdaq01]$ cd ~/online/rf_config
[bnqr@isdaq01 rf_config]$ make clean
[bnqr@isdaq01 rf_config]$ make

Note that when the odb is changed so that a new experim.h is needed, mdarc and the frontend must also be rebuilt.

mode parameters

The parameters for each mode (see #Introduction) are stored in ODB :

[local:bnqr:Stopped]/>ls "/equipment/FIFO_acq/mode parameters/"
Mode 10                         
Mode 1a                         
Mode 1b                         
Mode 1c                         
Mode 1f                         
Mode 1g                         
Mode 1j                         
Mode 1n                         
Mode 20                         
Mode 2a                         
Mode 2b                         
Mode 2c                         
Mode 2d                         
Mode 2e                         
Mode 2f         

The parameters for e.g. mode 20 (SLR) are shown below :

[local:bnqr:Stopped]/>ls "/equipment/FIFO_acq/mode parameters/mode 20"
MCS enable gate (ms)            10
Number of Prebeam dwelltimes    20
Number of Beam On dwelltimes    100
Number of Beam Off dwelltimes   1200
RFon Delay (dwelltimes)         0
RFon Duration (dwelltimes)      0
Flip helicity                   y
Helicity sleep time (ms)        3000
[local:bnqr:Stopped]/>

These parameters are presented to the user by the custom parameter page. They store the parameter values for the last run of that mode. When a run is started, the parameters from this area are copied to the actual input parameters area under /Equipment/Fifo_acq/Input or /Equipment/Fifo_acq/hardware. The copy is done by rf_config, using code in update_run_parameters.c . The psm parameters are set directly in the psm area (no copy is retained elsewhere).

To make a new mode, copy the closest mode, e.g.

[local:bnqr:Stopped]/>cd "/equipment/FIFO_acq/mode parameters/"
[local:bnqr:Stopped]/mode parameters> cp "Mode 20" "Mode 2x"

where the new mode is to be called "2x". Then modify or add more parameters in directory "Mode 2x".

Create a new function copy_2x in update_run_parameters.c to copy the local #mode parameters to the actual parameters in /Equipment/FIFO_acq/frontend/input and /Equipment/FIFO_acq/frontend/hardware. This subroutine will be called by rf_config at the begin-of-run. Also add the new function to copy_run_parameters.h and increase MAX_COPY_EXPT in the same file.

Adding a parameter to an existing mode

If the parameter is not already defined under /Equipment/FIFO_acq/frontend/input or /Equipment/FIFO_acq/frontend/hardware, add it first (see #Adding a new parameter). Then add it to the mode parameters for the existing mode (say Mode 1y) under /equipment/FIFO_acq/mode parameters/mode 1y.

Modify copy_1y to copy the new parameter to the input parameter area.

Note

Adding parameters under /Equipment/FIFO_acq will require making a new experim.h (see #experim) and recompiling clients that include experim.h.

/script and /customscript ODB trees

Each mode button (i.e. button to change mode) is a script button (on the MIDAS status page) and a customscript button (on the custom status page). The script/customscript button causes the perlscript change_mode.pl to run and change the mode. The customscript buttons are actually links to the script buttons. The script button is named for the mode (e.g. SLR, 1c). The script button "SLR" is defined in ODB as follows:

[local:bnqr:Stopped]SLR>ls
cmd                             /home/bnqr/vmic_online/perl/change_mode.pl
include path                    /home/bnqr/vmic_online/perl
experiment name -> /experiment/name
                                bnqr
select mode                     20
mode file tag                   defaults

The name of the script to run is given in the key cmd, and the parameters sent to the script are listed in the other keys. Although this script key is names "SLR", the select mode is set to "20", which is the name of the mode that rf_config uses. The key mode file tag indicates whether an optional mode file is to be loaded into ODB on changing to this mode. If left blank, no file is loaded. The example shows the value "defaults", which causes change_mode.pl to load the file ../online/modefiles/20_defaults.odb into the ODB on changing mode. To change this file for the new mode, follow instructions in #mode files.

To add a new mode, copy an existing mode and modify e.g.

[local:bnqr:Stopped]/Script>copy SLR 2x 
[local:bnqr:Stopped]/Script>copy SLR 2x 
[local:bnqr:Stopped]/Script>cd 2x
[local:bnqr:Stopped]2g>set "select mode" 2x

If loading defaults, create a defaults file ../online/modefiles/2x_defaults.odb by copying and modifying 20_defaults.odb . Otherwise, set "mode file tag" blank (no mode file loaded).

All a link to the new mode in the ODB /customscript directory, i.e.

[local:bnqr:Stopped]2x>cd /customscript
[local:bnqr:Stopped]/CustomScript>ln /script/2x 2x
[local:bnqr:Stopped]/CustomScript>move 2x 15

The new link is moved into the desired position with the Template:Odbedit cmd. The link in /customscript is necessary to have the script button appear on the custom status page.

ls 

modify change_mode.pl

New modes have to be added to ~/bn[mq]r/online/perl/change_mode.pl. There are several places to add the new mode.

1. check that the mode exists (# make a few sanity checks)
2. removing the link for new mode (add call to remove_a_link for new mode)
3. load _last_psm.odb if new mode uses RF (see #Tunes)

File change_mode.pl calls subroutines in do_link.pl. These subroutines do not need to be changed when a new link is added.

mode files

When the experimental mode is changed on the custom page, e.g. SLR to 1f, the perlscript change_mode.pl runs. It does various things, including possibly loading a mode file. This is a file loaded into the ODB to set certain parameters to default values on changing mode. The mode files can be found in ..online/modefiles. There is a file AAA_README (reproduced below) that explains how to change these files.

 
AAA_README

NOTE: FOR NOW, ONLY EXPERT USERS SHOULD BE CHANGING DEFAULT FILES  !!!
------------------------------------------------------------------------
[ All instructions refer to experiment bnmr. For bnqr, substitute bnqr for bnmr.]

This directory contains files of default settings of ODB parameters which are to be 
automatically loaded when the experimental mode (i.e. PPG Mode) is changed. 

For example, when mode "freq" is selected on the main status page of the browser, 
the file 1f_defaults.odb is to be loaded.

********************************************************************************
***  After editing these files, IT IS ESSENTIAL to run check_file.pl on them ***
***  to make sure that the key names exist in the odb.                       *** 
********************************************************************************

  The odbedit "load" command used to load the files will automatically create
  any keys that do not exist. This will almost certainly cause the DAQ system
  to fail with a Recordsize error at the start of the next run.

  If a spurious key is created by mistake, it must be deleted from the ODB 
  (using e.g. odbedit rm command ) before the run can start.

=========================================================
=   To check a file with check_file.pl, the command is  =
=                                                       =
=   cd ~bnmr/$ONLINE/modefiles                          =
=   check_file.pl  <filename>                           =
=                                                       =
=    e.g. check_file.pl  1f_defaults.odb                =
=========================================================
This perlscript (check_file.pl) invokes another perlscript, called mode_check.pl
to check the file.


To control which file of defaults gets loaded (or none):
----------------------------------------------------------
Provision has been included to load one of the following on changing mode:
   A. no default file
   B. a file of defaults
   C. a file of the user's choosing
 
Only an expert user should mess with this!

In the odb, in directory /scripts  there is a sub-directory for every supported mode.
Using odbedit in an xterm,

$ odbedit 
[local:bnmr:S]/>ls /Script/freq
cmd                             /home/bnmr/online/perl/change_mode.pl
include path                    /home/bnmr/online/perl
experiment name                 /experiment/name
select mode                     1f
mode file tag                   defaults
[local:bnmr:S]/>exit
$

The keys "select mode" and  "mode file tag" are combined to specify which file is to
be loaded when changing mode.  In this case, the file will be
~bnmr/$ONLINE/modefiles/1f_defaults.odb

To specify no file is to be loaded,  "mode file tag" is set to "none".
To specify some other file, say 1f_mytest.odb,  "mode file tag" must be set to "mytest"


To change or add/remove default settings to the file
-----------------------------------------------------
The files are in ASCII, in the format used by the odbedit "save" command, e.g. for
1f_defaults.odb

[/Equipment/FIFO_acq/Frontend/Hardware/PSM]
ALL profiles enabled = BOOL : n
one_f profile enabled = BOOL : y
three_f profile enabled = BOOL : n
five_f profile enabled = BOOL : n
fREF profile enabled = BOOL : n
quadrature modulation mode = BOOL : y
scale factor (def 181 max 255) = INT : 181

The first line is the DIRECTORY
The following lines are those KEYS in that directory that need default values.
Only those keys that require default values are specified. Any others will not be 
changed when the file is loaded.

To add keys in a second directory, add a line with the new directory, followed by
line(s) containing the key(s).
   
Edit the file, e.g.
$ cd ~bnmr/$ONLINE/modefiles
$ emacs 1f_defaults.odb

Changing/removing default settings is easy. Just edit the value, or delete the whole key.

Adding a new key or directory requires care. The safest way is to find the new 
key and/or directory in a recent odb saved file. You can create your own by 
using the odbedit command "save", in the directory of the key you wish to add.

e.g.
$ odbedit
$ cd "/equipment/fifo_acq/Frontend/hardware"
$ save temp.odb

Copy the keys you need from the file "temp.odb" into the default file.

Otherwise you can find all the information saved in the file ~bnmr/$ONLINE/bnmr/bnmr.odb, 
which is a saved version of the whole odb. 

Copy the new key and/or directory to the defaults file you are editing EXACTLY as it appears 
in the saved odb file.  Change the value as desired.
Save the file, and ALWAYS RUN check_file.pl (see above)  on it to check the 
validity of the keys.

/PPG ODB tree

In the ODB directory /PPG there is a subdirectory for each mode containing links to the actual parameters in /Equipment/FIFO_acq/frontend/input and /Equipment/FIFO_acq/frontend/hardware. These are needed if anyone is using the Midas status page, rather than the Custom status page. They therefore are no longer used much, but should be provided in case of failure of the custom status page.

Tunes

The #Tunes directory for each mode contains files automatically created by the perlscript tunes.pl.

• a file _last.odb a saved odb file containing the mode parameters and values for the last time this mode was run
• a file _current.odb a saved odb file containing the mode parameters and current values. These will be the same as _last.odb unless the user has changed some values since the last time this mode was run.
• a file _last_psm.odb if the mode uses RF. This is a saved odb file containing the psm parameters and values for the last time this mode was run.
• a file _current_psm.odb if the mode uses RF. This is a saved odb file containing the psm parameters and current values. These will be the same as _last_psm.odb unless the user has changed some PSM values since the last time this mode was run.
• optionally tune files (e.g. mytune.odb) saved by the users, saving the mode parameters and their values for states they might want to return to.
• optionally psm files (e.g. mytune_psm.odb) for each tune saved by the users when they saved a tune, if this mode uses RF.
• a file tune_names.odb containing the current list of saved tunes

Create a directory for the new mode under /home/bn[mq]r/online/tunes, e.g.

[bnqr@isdaq01 tunes]$ mkdir mode_2x

This directory will contain any tunes the user may create, and the files used to reload the saved settings when the mode is changed. Create _current.odb and _last.odb in this directory by saving the #mode parameters e.g.

[bnqr@isdaq01 tunes]$ cd mode_2x
[bnqr@isdaq01 mode_2x]$ odb
   [local:bnqr:Stopped]>cd "/Equipment/FIFO_acq/mode parameters/mode 2x"
   [local:bnqr:Stopped]>save _last.odb
   [local:bnqr:Stopped]>save _current.odb
   [local:bnqr:Stopped]>quit
[bnqr@isdaq01 mode_2x]$ ls
_current.odb  _last.odb
[bnqr@isdaq01 mode_2x]$ less _current.odb
  [/Equipment/FIFO_acq/mode parameters/Mode 2x]
  MCS enable gate (ms) = FLOAT : 10
  Number of Prebeam dwelltimes = DWORD : 20
  Number of Beam On dwelltimes = DWORD : 100
  Number of Beam Off dwelltimes = DWORD : 1200
  Flip helicity = BOOL : y
  Helicity sleep time (ms) = INT : 3000

If the mode needs the psm parameters, copy psm parameter files {{File|name=_current_psm.odb}] and _last_psm.odb from another mode, or save them from odb in a similar way.

Modify tunes.pl

If the new tune does NOT use PSM parameters, add the mode to the pattern match in tunes.pl to make $needpsm be 0.

Modify Custom Status Page

All custom pages to run with mhttpd are located in directory /home/bn[mq]r/custom/. The new mode must be added to the custom status page. The modes are generated in file cs_functions.js. Add the new mode name to array mode1Names[] or mode2Names[] where appropriate. If adding a type1 mode, increment num_type1_modes, the number of actual type1 modes excluding combined modes. Add any comment to mode1Info[] or mode2Info[]. Add a link to the timing diagram in the array diag[]. In function build_ppgmode_buttons() add the new mode to the switch and assign the index idx.

Modify Custom Parameters Page

All custom pages to run with mhttpd are located in directory /home/bn[mq]r/custom/. In parameters.html, again add a link to the timing diagram in the array diag[]. Add the special name if appropriate to ppg_mode_array[] and ppg_mode_names[].

If new parameters have been added in /Equipment/FIFO_acq/frontend/input and /Equipment/FIFO_acq/frontend/hardware for the new mode, these parameters must be added as globals. They may need to be added in functions setup_ppgmode(), setup_true_ppg_paths(), get_globals(). Add the mode as required to appear in the parameters list as required in functions setup_rf() write_freq_scan_params(), write_all_params() check_consistency() etc. Add the new mode to the appropriate pattern to have the parameter appear in the mode's parameter list.