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ID	Date	Author	Topic	Subject
1607	10 Jul 2019	Hassan	Bug Report	Header files missing when trying to compile rootana, roody and analyzer
Hi, we have now done a clean install of Root and after some dynamic linking we have been able to make Rootana and analyzer. However we get an error when we try to run analyzer. -------------------------------------------------------------------------------------------------------------------------------------------------- First of all heres the information requested: [hh19285@it038146 ~]$ which root-config /software/root/v6.06.08/bin/root-config [hh19285@it038146 ~]$ root-config --version 6.06/08 [hh19285@it038146 ~]$ root-config --features asimage astiff builtin_afterimage builtin_fftw3 builtin_ftgl builtin_freetype builtin_glew builtin_pcre builtin_lzma builtin_davix builtin_gsl builtin_cfitsio builtin_xrootd builtin_llvm cxx11 cling davix exceptions explicitlink fftw3 fitsio fortran gdml genvector http krb5 mathmore memstat minuit2 opengl pch python roofit shadowpw shared ssl table thread tmva unuran vc vdt xft xml x11 xrootd [hh19285@it038146 ~]$ root-config --cflags -pthread -std=c++11 -Wno-deprecated-declarations -m64 -I/software/root/v6.06.08/include ------------------------------------------------------------------------------------------------------------------------------------------------------ [hh19285@it038146 ~]$ cd ~/online/build/ [hh19285@it038146 build]$ ls analyzer CMakeCache.txt CMakeFiles cmake_install.cmake data.txt d.txt experimentaldata frontend ft232h.py f.txt iptable_state_2july19.txt Makefile midas.log [hh19285@it038146 build]$ make [ 71%] Built target analyzer [100%] Built target frontend [hh19285@it038146 build]$ ./analyzer Warning in <TClassTable::Add>: class TApplication already in TClassTable Warning in <TClassTable::Add>: class TApplicationImp already in TClassTable Warning in <TClassTable::Add>: class TAttFill already in TClassTable Warning in <TClassTable::Add>: class TAttLine already in TClassTable Warning in <TClassTable::Add>: class TAttMarker already in TClassTable Warning in <TClassTable::Add>: class TAttPad already in TClassTable Warning in <TClassTable::Add>: class TAttAxis already in TClassTable Warning in <TClassTable::Add>: class TAttText already in TClassTable Warning in <TClassTable::Add>: class TAtt3D already in TClassTable Warning in <TClassTable::Add>: class TAttBBox already in TClassTable Warning in <TClassTable::Add>: class TAttBBox2D already in TClassTable Warning in <TClassTable::Add>: class TBenchmark already in TClassTable Warning in <TClassTable::Add>: class TBrowser already in TClassTable Warning in <TClassTable::Add>: class TBrowserImp already in TClassTable Warning in <TClassTable::Add>: class TBuffer already in TClassTable Warning in <TClassTable::Add>: class TRootIOCtor already in TClassTable Warning in <TClassTable::Add>: class TCanvasImp already in TClassTable Warning in <TClassTable::Add>: class TColor already in TClassTable Warning in <TClassTable::Add>: class TColorGradient already in TClassTable Warning in <TClassTable::Add>: class TLinearGradient already in TClassTable Warning in <TClassTable::Add>: class TRadialGradient already in TClassTable Warning in <TClassTable::Add>: class TContextMenu already in TClassTable Warning in <TClassTable::Add>: class TContextMenuImp already in TClassTable Warning in <TClassTable::Add>: class TControlBarImp already in TClassTable Warning in <TClassTable::Add>: class TInspectorImp already in TClassTable Warning in <TClassTable::Add>: class TDatime already in TClassTable Warning in <TClassTable::Add>: class TDirectory already in TClassTable Warning in <TClassTable::Add>: class TEnv already in TClassTable Warning in <TClassTable::Add>: class TEnvRec already in TClassTable Warning in <TClassTable::Add>: class TFileHandler already in TClassTable Warning in <TClassTable::Add>: class TGuiFactory already in TClassTable Warning in <TClassTable::Add>: class TStyle already in TClassTable Warning in <TClassTable::Add>: class TVirtualX already in TClassTable Warning in <TClassTable::Add>: class TVirtualPad already in TClassTable Warning in <TClassTable::Add>: class TVirtualViewer3D already in TClassTable Warning in <TClassTable::Add>: class TBuffer3D already in TClassTable Warning in <TClassTable::Add>: class TGLManager already in TClassTable Warning in <TClassTable::Add>: class TVirtualGLPainter already in TClassTable Warning in <TClassTable::Add>: class TVirtualGLManip already in TClassTable Warning in <TClassTable::Add>: class TVirtualPS already in TClassTable Warning in <TClassTable::Add>: class TGLPaintDevice already in TClassTable Warning in <TClassTable::Add>: class TVirtualPadPainter already in TClassTable Warning in <TClassTable::Add>: class TVirtualPadEditor already in TClassTable Warning in <TClassTable::Add>: class TVirtualFFT already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<char,string> already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const char,string> already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<string,vector<string> > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const string,vector<string> > already in TClassTable Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<string,vector<string> > > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<TString,vector<TString> > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const TString,vector<TString> > already in TClassTable Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<TString,vector<TString> > > already in TClassTable Warning in <TClassTable::Add>: class FileStat_t already in TClassTable Warning in <TClassTable::Add>: class UserGroup_t already in TClassTable Warning in <TClassTable::Add>: class SysInfo_t already in TClassTable Warning in <TClassTable::Add>: class CpuInfo_t already in TClassTable Warning in <TClassTable::Add>: class MemInfo_t already in TClassTable Warning in <TClassTable::Add>: class ProcInfo_t already in TClassTable Warning in <TClassTable::Add>: class RedirectHandle_t already in TClassTable Warning in <TClassTable::Add>: class TExec already in TClassTable Warning in <TClassTable::Add>: class TFolder already in TClassTable Warning in <TClassTable::Add>: class TMacro already in TClassTable Warning in <TClassTable::Add>: class TMD5 already in TClassTable Warning in <TClassTable::Add>: class TMemberInspector already in TClassTable Warning in <TClassTable::Add>: class TMessageHandler already in TClassTable Warning in <TClassTable::Add>: class TNamed already in TClassTable Warning in <TClassTable::Add>: class TObjString already in TClassTable Warning in <TClassTable::Add>: class TObject already in TClassTable Warning in <TClassTable::Add>: class TRemoteObject already in TClassTable Warning in <TClassTable::Add>: class TPoint already in TClassTable Warning in <TClassTable::Add>: class TProcessID already in TClassTable Warning in <TClassTable::Add>: class TProcessUUID already in TClassTable Warning in <TClassTable::Add>: class TProcessEventTimer already in TClassTable Warning in <TClassTable::Add>: class TRef already in TClassTable Warning in <TClassTable::Add>: class TROOT already in TClassTable Warning in <TClassTable::Add>: class TRegexp already in TClassTable Warning in <TClassTable::Add>: class TPRegexp already in TClassTable Warning in <TClassTable::Add>: class TPMERegexp already in TClassTable Warning in <TClassTable::Add>: class TRefCnt already in TClassTable Warning in <TClassTable::Add>: class TSignalHandler already in TClassTable Warning in <TClassTable::Add>: class TStdExceptionHandler already in TClassTable Warning in <TClassTable::Add>: class TStopwatch already in TClassTable Warning in <TClassTable::Add>: class TStorage already in TClassTable Warning in <TClassTable::Add>: class TString already in TClassTable Warning in <TClassTable::Add>: class TStringLong already in TClassTable Warning in <TClassTable::Add>: class TStringToken already in TClassTable Warning in <TClassTable::Add>: class TSubString already in TClassTable Warning in <TClassTable::Add>: class TSysEvtHandler already in TClassTable Warning in <TClassTable::Add>: class TSystem already in TClassTable Warning in <TClassTable::Add>: class TSystemFile already in TClassTable Warning in <TClassTable::Add>: class TSystemDirectory already in TClassTable Warning in <TClassTable::Add>: class TTask already in TClassTable Warning in <TClassTable::Add>: class TTime already in TClassTable Warning in <TClassTable::Add>: class TTimer already in TClassTable Warning in <TClassTable::Add>: class TQObject already in TClassTable Warning in <TClassTable::Add>: class TQObjSender already in TClassTable Warning in <TClassTable::Add>: class TQClass already in TClassTable Warning in <TClassTable::Add>: class TQConnection already in TClassTable Warning in <TClassTable::Add>: class TQCommand already in TClassTable Warning in <TClassTable::Add>: class TQUndoManager already in TClassTable Warning in <TClassTable::Add>: class TUUID already in TClassTable Warning in <TClassTable::Add>: class TPluginHandler already in TClassTable Warning in <TClassTable::Add>: class TPluginManager already in TClassTable Warning in <TClassTable::Add>: class Event_t already in TClassTable Warning in <TClassTable::Add>: class SetWindowAttributes_t already in TClassTable Warning in <TClassTable::Add>: class WindowAttributes_t already in TClassTable Warning in <TClassTable::Add>: class GCValues_t already in TClassTable Warning in <TClassTable::Add>: class ColorStruct_t already in TClassTable Warning in <TClassTable::Add>: class PictureAttributes_t already in TClassTable Warning in <TClassTable::Add>: class Segment_t already in TClassTable Warning in <TClassTable::Add>: class Point_t already in TClassTable Warning in <TClassTable::Add>: class Rectangle_t already in TClassTable Warning in <TClassTable::Add>: class timespec already in TClassTable Warning in <TClassTable::Add>: class TTimeStamp already in TClassTable Warning in <TClassTable::Add>: class TFileInfo already in TClassTable Warning in <TClassTable::Add>: class TFileInfoMeta already in TClassTable Warning in <TClassTable::Add>: class TFileCollection already in TClassTable Warning in <TClassTable::Add>: class TVirtualAuth already in TClassTable Warning in <TClassTable::Add>: class TVirtualMutex already in TClassTable Warning in <TClassTable::Add>: class TLockGuard already in TClassTable Warning in <TClassTable::Add>: class TRedirectOutputGuard already in TClassTable Warning in <TClassTable::Add>: class TVirtualPerfStats already in TClassTable Warning in <TClassTable::Add>: class TVirtualMonitoringWriter already in TClassTable Warning in <TClassTable::Add>: class TVirtualMonitoringReader already in TClassTable Warning in <TClassTable::Add>: class TObjectSpy already in TClassTable Warning in <TClassTable::Add>: class TObjectRefSpy already in TClassTable Warning in <TClassTable::Add>: class TUri already in TClassTable Warning in <TClassTable::Add>: class TUrl already in TClassTable Warning in <TClassTable::Add>: class TInetAddress already in TClassTable Warning in <TClassTable::Add>: class TVirtualTableInterface already in TClassTable Warning in <TClassTable::Add>: class TBase64 already in TClassTable Warning in <TClassTable::Add>: class TParameter<bool> already in TClassTable Warning in <TClassTable::Add>: class TParameter<float> already in TClassTable Warning in <TClassTable::Add>: class TParameter<double> already in TClassTable Warning in <TClassTable::Add>: class TParameter<int> already in TClassTable Warning in <TClassTable::Add>: class TParameter<long> already in TClassTable Warning in <TClassTable::Add>: class TParameter<Long64_t> already in TClassTable Warning in <TClassTable::Add>: class TArray already in TClassTable Warning in <TClassTable::Add>: class TArrayC already in TClassTable Warning in <TClassTable::Add>: class TArrayD already in TClassTable Warning in <TClassTable::Add>: class TArrayF already in TClassTable Warning in <TClassTable::Add>: class TArrayI already in TClassTable Warning in <TClassTable::Add>: class TArrayL already in TClassTable Warning in <TClassTable::Add>: class TArrayL64 already in TClassTable Warning in <TClassTable::Add>: class TArrayS already in TClassTable Warning in <TClassTable::Add>: class TBits already in TClassTable Warning in <TClassTable::Add>: class TCollection already in TClassTable Warning in <TClassTable::Add>: class TBtree already in TClassTable Warning in <TClassTable::Add>: class TBtreeIter already in TClassTable Warning in <TClassTable::Add>: class TClassTable already in TClassTable Warning in <TClassTable::Add>: class TClonesArray already in TClassTable Warning in <TClassTable::Add>: class THashTable already in TClassTable Warning in <TClassTable::Add>: class THashTableIter already in TClassTable Warning in <TClassTable::Add>: class TIter already in TClassTable Warning in <TClassTable::Add>: class TIterator already in TClassTable Warning in <TClassTable::Add>: class TList already in TClassTable Warning in <TClassTable::Add>: class TListIter already in TClassTable Warning in <TClassTable::Add>: class THashList already in TClassTable Warning in <TClassTable::Add>: class TMap already in TClassTable Warning in <TClassTable::Add>: class TMapIter already in TClassTable Warning in <TClassTable::Add>: class TPair already in TClassTable Warning in <TClassTable::Add>: class TObjArray already in TClassTable Warning in <TClassTable::Add>: class TObjArrayIter already in TClassTable Warning in <TClassTable::Add>: class TObjectTable already in TClassTable Warning in <TClassTable::Add>: class TOrdCollection already in TClassTable Warning in <TClassTable::Add>: class TOrdCollectionIter already in TClassTable Warning in <TClassTable::Add>: class TSeqCollection already in TClassTable Warning in <TClassTable::Add>: class TSortedList already in TClassTable Warning in <TClassTable::Add>: class TExMap already in TClassTable Warning in <TClassTable::Add>: class TExMapIter already in TClassTable Warning in <TClassTable::Add>: class TRefArray already in TClassTable Warning in <TClassTable::Add>: class TRefArrayIter already in TClassTable Warning in <TClassTable::Add>: class TRefTable already in TClassTable Warning in <TClassTable::Add>: class TVirtualCollectionProxy already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<int,vector<int> > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const int,vector<int> > already in TClassTable Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<int,vector<int> > > already in TClassTable Warning in <TClassTable::Add>: class TBits::TReference already in TClassTable Warning in <TClassTable::Add>: class TBaseClass already in TClassTable Warning in <TClassTable::Add>: class TClass already in TClassTable Warning in <TClassTable::Add>: class TClassStreamer already in TClassTable Warning in <TClassTable::Add>: class TMemberStreamer already in TClassTable Warning in <TClassTable::Add>: class TDictAttributeMap already in TClassTable Warning in <TClassTable::Add>: class TClassRef already in TClassTable Warning in <TClassTable::Add>: class TClassGenerator already in TClassTable Warning in <TClassTable::Add>: class TDataMember already in TClassTable Warning in <TClassTable::Add>: class TOptionListItem already in TClassTable Warning in <TClassTable::Add>: class TDataType already in TClassTable Warning in <TClassTable::Add>: class TDictionary already in TClassTable Warning in <TClassTable::Add>: class TEnumConstant already in TClassTable Warning in <TClassTable::Add>: class TEnum already in TClassTable Warning in <TClassTable::Add>: class TFunction already in TClassTable Warning in <TClassTable::Add>: class TFunctionTemplate already in TClassTable Warning in <TClassTable::Add>: class ROOT::TSchemaRule already in TClassTable Warning in <TClassTable::Add>: class ROOT::TSchemaRule::TSources already in TClassTable Warning in <TClassTable::Add>: class ROOT::Detail::TSchemaRuleSet already in TClassTable Warning in <TClassTable::Add>: class TGlobal already in TClassTable Warning in <TClassTable::Add>: class TMethod already in TClassTable Warning in <TClassTable::Add>: class TMethodArg already in TClassTable Warning in <TClassTable::Add>: class TMethodCall already in TClassTable Warning in <TClassTable::Add>: class TInterpreter already in TClassTable Warning in <TClassTable::Add>: class TClassMenuItem already in TClassTable Warning in <TClassTable::Add>: class TVirtualIsAProxy already in TClassTable Warning in <TClassTable::Add>: class TVirtualStreamerInfo already in TClassTable Warning in <TClassTable::Add>: class TIsAProxy already in TClassTable Warning in <TClassTable::Add>: class TProtoClass already in TClassTable Warning in <TClassTable::Add>: class TProtoClass::TProtoRealData already in TClassTable Warning in <TClassTable::Add>: class TRealData already in TClassTable Warning in <TClassTable::Add>: class TStreamerArtificial already in TClassTable Warning in <TClassTable::Add>: class TStreamerBase already in TClassTable Warning in <TClassTable::Add>: class TStreamerBasicPointer already in TClassTable Warning in <TClassTable::Add>: class TStreamerLoop already in TClassTable Warning in <TClassTable::Add>: class TStreamerBasicType already in TClassTable Warning in <TClassTable::Add>: class TStreamerObject already in TClassTable Warning in <TClassTable::Add>: class TStreamerObjectAny already in TClassTable Warning in <TClassTable::Add>: class TStreamerObjectPointer already in TClassTable Warning in <TClassTable::Add>: class TStreamerObjectAnyPointer already in TClassTable Warning in <TClassTable::Add>: class TStreamerString already in TClassTable Warning in <TClassTable::Add>: class TStreamerSTL already in TClassTable Warning in <TClassTable::Add>: class TStreamerSTLstring already in TClassTable Warning in <TClassTable::Add>: class TStreamerElement already in TClassTable Warning in <TClassTable::Add>: class TToggle already in TClassTable Warning in <TClassTable::Add>: class TToggleGroup already in TClassTable Warning in <TClassTable::Add>: class TFileMergeInfo already in TClassTable Warning in <TClassTable::Add>: class TListOfFunctions already in TClassTable Warning in <TClassTable::Add>: class TListOfFunctionsIter already in TClassTable Warning in <TClassTable::Add>: class TListOfFunctionTemplates already in TClassTable Warning in <TClassTable::Add>: class TListOfDataMembers already in TClassTable Warning in <TClassTable::Add>: class TListOfEnums already in TClassTable Warning in <TClassTable::Add>: class TListOfEnumsWithLock already in TClassTable Warning in <TClassTable::Add>: class TListOfEnumsWithLockIter already in TClassTable Warning in <TClassTable::Add>: class TUnixSystem already in TClassTable Warning in <TClassTable::Add>: class TThread already in TClassTable Warning in <TClassTable::Add>: class TConditionImp already in TClassTable Warning in <TClassTable::Add>: class TCondition already in TClassTable Warning in <TClassTable::Add>: class TMutex already in TClassTable Warning in <TClassTable::Add>: class TMutexImp already in TClassTable Warning in <TClassTable::Add>: class TPosixCondition already in TClassTable Warning in <TClassTable::Add>: class TPosixMutex already in TClassTable Warning in <TClassTable::Add>: class TPosixThread already in TClassTable Warning in <TClassTable::Add>: class TPosixThreadFactory already in TClassTable Warning in <TClassTable::Add>: class TSemaphore already in TClassTable Warning in <TClassTable::Add>: class TThreadFactory already in TClassTable Warning in <TClassTable::Add>: class TThreadImp already in TClassTable Warning in <TClassTable::Add>: class TRWLock already in TClassTable Warning in <TClassTable::Add>: class TAtomicCount already in TClassTable Warning in <TClassTable::Add>: class TBufferFile already in TClassTable Warning in <TClassTable::Add>: class TDirectoryFile already in TClassTable Warning in <TClassTable::Add>: class TFile already in TClassTable Warning in <TClassTable::Add>: class TFileCacheRead already in TClassTable Warning in <TClassTable::Add>: class TFileCacheWrite already in TClassTable Warning in <TClassTable::Add>: class TFileMerger already in TClassTable Warning in <TClassTable::Add>: class TFree already in TClassTable Warning in <TClassTable::Add>: class TKey already in TClassTable Warning in <TClassTable::Add>: class TKeyMapFile already in TClassTable Warning in <TClassTable::Add>: class TMapFile already in TClassTable Warning in <TClassTable::Add>: class TMapRec already in TClassTable Warning in <TClassTable::Add>: class TMemFile already in TClassTable Warning in <TClassTable::Add>: class TArchiveFile already in TClassTable Warning in <TClassTable::Add>: class TArchiveMember already in TClassTable Warning in <TClassTable::Add>: class TZIPFile already in TClassTable Warning in <TClassTable::Add>: class TZIPMember already in TClassTable Warning in <TClassTable::Add>: class TLockFile already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfo already in TClassTable Warning in <TClassTable::Add>: class TCollectionProxyFactory already in TClassTable Warning in <TClassTable::Add>: class TEmulatedCollectionProxy already in TClassTable Warning in <TClassTable::Add>: class TEmulatedMapProxy already in TClassTable Warning in <TClassTable::Add>: class TGenCollectionProxy already in TClassTable Warning in <TClassTable::Add>: class TGenCollectionProxy::Value already in TClassTable Warning in <TClassTable::Add>: class TGenCollectionProxy::Method already in TClassTable Warning in <TClassTable::Add>: class TCollectionStreamer already in TClassTable Warning in <TClassTable::Add>: class TCollectionClassStreamer already in TClassTable Warning in <TClassTable::Add>: class TCollectionMemberStreamer already in TClassTable Warning in <TClassTable::Add>: class TVirtualObject already in TClassTable Warning in <TClassTable::Add>: class TVirtualArray already in TClassTable Warning in <TClassTable::Add>: class TFPBlock already in TClassTable Warning in <TClassTable::Add>: class TFilePrefetch already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfoActions::TConfiguredAction already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfoActions::TActionSequence already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfoActions::TConfiguration already in TClassTable Break * segmentation violation =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007f7e8c322bbc in waitpid () from /lib64/libc.so.6 #1 0x00007f7e8c2a0ea2 in do_system () from /lib64/libc.so.6 #2 0x00007f7e911b21a4 in TUnixSystem::StackTrace() () from /usr/lib64/root/libCore.so.6.16 #3 0x00007f7e911b3fec in TUnixSystem::DispatchSignals(ESignals) () from /usr/lib64/root/libCore.so.6.16 #4 <signal handler called> #5 0x00007f7e8c3cca81 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f7e853e0c27 in TCling::TCling(char const, char const) () from /software/root/v6.06.08/lib/libCling.so #7 0x00007f7e853e179e in CreateInterpreter () from /software/root/v6.06.08/lib/libCling.so #8 0x00007f7e90feb1fc in TROOT::InitInterpreter() () from /usr/lib64/root/libCore.so.6.16 #9 0x00007f7e90feb806 in ROOT::Internal::GetROOT2() () from /usr/lib64/root/libCore.so.6.16 #10 0x00007f7e9107b32d in TApplication::TApplication(char const, int, char*, void, int) () from /usr/lib64/root/libCore.so.6.16 #11 0x00007f7e8e71bdf4 in TRint::TRint(char const, int, char*, void, int, bool) () from /usr/lib64/root/libRint.so.6.16 #12 0x000000000040d362 in main (argc=1, argv=0x7fff4d1d53b8) at /home/hh19285/packages/midas1/src/mana.cxx:5349 =========================================================== The lines below might hint at the cause of the crash. You may get help by asking at the ROOT forum http://root.cern.ch/forum Only if you are really convinced it is a bug in ROOT then please submit a report at http://root.cern.ch/bugs Please post the ENTIRE stack trace from above as an attachment in addition to anything else that might help us fixing this issue. =========================================================== #5 0x00007f7e8c3cca81 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f7e853e0c27 in TCling::TCling(char const, char const) () from /software/root/v6.06.08/lib/libCling.so #7 0x00007f7e853e179e in CreateInterpreter () from /software/root/v6.06.08/lib/libCling.so #8 0x00007f7e90feb1fc in TROOT::InitInterpreter() () from /usr/lib64/root/libCore.so.6.16 #9 0x00007f7e90feb806 in ROOT::Internal::GetROOT2() () from /usr/lib64/root/libCore.so.6.16 #10 0x00007f7e9107b32d in TApplication::TApplication(char const, int, char*, void, int) () from /usr/lib64/root/libCore.so.6.16 #11 0x00007f7e8e71bdf4 in TRint::TRint(char const, int, char*, void, int, bool) () from /usr/lib64/root/libRint.so.6.16 #12 0x000000000040d362 in main (argc=1, argv=0x7fff4d1d53b8) at /home/hh19285/packages/midas1/src/mana.cxx:5349 =========================================================== > > /home/hh19285/packages/rootana/include/TRootanaEventLoop.hxx:24:25: fatal error: > > THttpServer.h: No such file or directory > > #include "THttpServer.h" > > > > include/TPeakFindPanel.h:46:23: fatal error: TSpectrum.h: No such file or directory > > #include "TSpectrum.h" > > > > Your ROOT is strange, missing some standard features. Also installed in a strange place, /usr/include/root. > > Did you install ROOT from the EPEL RPM packages? In the last I have seen this ROOT built very strangely, with some standard features disabled for no obvious > reason. > > For this reason, I recommend that you install ROOT from the binary distribution at root.cern.ch or build it from source. > > For more debugging, please post the output of: > which root-config > root-config --version > root-config --features > root-config --cflags > > For reference, here is my output for a typical CentOS7 machine: > daq16:~$ which root-config > /daq/daqshare/olchansk/root/root_v6.12.04_el74_64/bin/root-config > daq16:~$ root-config --version > 6.12/04 > daq16:~$ root-config --features > asimage astiff builtin_afterimage builtin_ftgl builtin_gl2ps builtin_glew builtin_llvm builtin_lz4 builtin_unuran cling cxx11 exceptions explicitlink fftw3 gdmlgenvector > http imt mathmore minuit2 opengl pch pgsql python roofit shared sqlite ssl thread tmva x11 xft xml > daq16:~$ root-config --cflags -pthread -std=c++11 -m64 -I/daq/daqshare/olchansk/root/root_v6.12.04_el74_64/include > > The important one is the --features, see that "http" and "xml" are enabled. "spectrum" used to be an optional feature, I do not think it can be disabled these > days, so your missing "TSpectrum.h" is strange. (But I just think the EPEL ROOT RPMs are built wrong). > > K.O.
1625	22 Jul 2019	Hassan	Bug Report	Fetest History Plot
Hi, We've been trying to run Fetest in the attempt of plotting the sine wave data on the history page on the web server. However each time we've tried running a new plot we have come across the error of 'no data' from the variables. In the status page we are clearly obtaining data from the frontend and it is updating the variable as expected in SLOW. When setting up MIDAS we managed to produce a history plot from Fetest but are unable to do so any longer. We did have a go at modifying the Fetest code but created a backup before doing so and are now running the original backup. What could be causing the Fetest data not to be showing in the history plot?
Draft	25 Jul 2019	Hassan	Bug Report	Fetest History Plot
================================================================= [lm17773@it038146 bin]$ fetest Frontend name : fetest Event buffer size : 10485760 User max event size : 4194304 User max frag. size : 4194304 # of events per buffer : 2 Connect to experiment sampleexpt... OK Init hardware...frontend_init! Event size set to 10240 bytes Ring buffer wait sleep 1 ms OK time 1564044856, data 74.314484 time 1564044857, data 77.714600 time 1564044858, data 80.901703 time 1564044859, data 83.867058 time 1564044860, data 86.602539 time 1564044861, data 89.100655 time 1564044862, data 91.354546 time 1564044863, data 93.358040 time 1564044864, data 95.105652 time 1564044865, data 96.592583 Warning: bank RND4 has zero size time 1564044866, data 97.814758 time 1564044867, data 98.768837 time 1564044868, data 99.452187 time 1564044869, data 99.862953 time 1564044870, data 100.000000 time 1564044872, data 99.452187 time 1564044873, data 98.768837 Warning: bank RND6 has zero size time 1564044874, data 97.814758 Received break. Aborting... frontend_exit! Frontend shut down. [lm17773@it038146 bin]$ =========================================================================== 10:00:56.999 2019/07/25 [fetest,INFO] Program fetest on host localhost stopped 10:00:32.483 2019/07/25 [mhttpd,INFO] Run #29 stopped 09:59:10.666 2019/07/25 [fetest,INFO] Program fetest on host localhost started 09:59:07.731 2019/07/25 [fetest,INFO] Program fetest on host localhost stopped 09:58:13.700 2019/07/25 [Logger,INFO] Program Logger on host localhost started 09:58:12.707 2019/07/25 [Logger,INFO] Program Logger on host localhost stopped 09:57:19.136 2019/07/25 [mhttpd,INFO] Run #29 started 09:57:18.954 2019/07/25 [Logger,ERROR] [mlogger.cxx:3801:log_create_writer,ERROR] channel requested GZIP/ZLIB compression, but ZLIB is not available 09:57:15.305 2019/07/25 [mhttpd,INFO] Run #28 stopped 09:55:30.694 2019/07/25 [fetest,INFO] Program fetest on host localhost started 09:54:34.519 2019/07/25 [fetest,INFO] Program fetest on host localhost stopped 09:54:16.852 2019/07/25 [fetest,INFO] Program fetest on host localhost started 09:53:59.554 2019/07/25 [fetest,INFO] Program fetest on host localhost stopped 09:47:25.932 2019/07/25 [mhttpd,INFO] Program mhttpd on host localhost started 09:47:19.863 2019/07/25 [Logger,INFO] Program Logger on host localhost started 09:47:04.116 2019/07/25 [fetest,ERROR] [midas.cxx:6690:cm_shutdown,ERROR] Killing and Deleting client 'fetest' pid 1921 09:47:04.116 2019/07/25 [fetest,ERROR] [midas.cxx:6687:cm_shutdown,ERROR] Cannot connect to client 'fetest' on host 'localhost', port 38595 09:47:04.116 2019/07/25 [fetest,ERROR] [midas.cxx:10497:rpc_client_connect,ERROR] cannot connect to host "localhost", port 38595: connect() returned -1, errno 111 (Connection refused) 09:47:04.116 2019/07/25 [fetest,INFO] Program fetest on host localhost started 09:47:04.116 2019/07/25 [fetest,INFO] Deleted entry '/System/Clients/1613' for client 'mhttpd' because it is not connected to ODB 09:47:04.116 2019/07/25 [fetest,INFO] Corrected 9 ODB entries 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Equipment/random/Statistics" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Equipment/random/Statistics" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Equipment/random/Common" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Equipment/random/Common" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Equipment/slow/Statistics" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Equipment/slow/Statistics" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Equipment/slow/Common" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Equipment/slow/Common" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Equipment/test/Statistics" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Equipment/test/Statistics" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Equipment/test/Common" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Equipment/test/Common" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Sequencer/State" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Sequencer/State" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Experiment/Security/mhttpd hosts/Allowed hosts" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Experiment/Security/mhttpd hosts/Allowed hosts" 09:47:04.116 2019/07/25 [fetest,INFO] Removed exclusive access mode from "/Experiment/Security/RPC hosts/Allowed hosts" 09:47:04.116 2019/07/25 [fetest,INFO] Removed open record flag from "/Experiment/Security/RPC hosts/Allowed hosts" 09:47:04.115 2019/07/25 [fetest,ERROR] [odb.cxx:1646:db_open_database,ERROR] Removed ODB client 'fetest', index 2 because process pid 1921 does not exists 09:47:04.115 2019/07/25 [fetest,ERROR] [odb.cxx:1646:db_open_database,ERROR] Removed ODB client 'mhttpd', index 0 because process pid 1613 does not exists =========================================================================== > > Hi, > > > > We've been trying to run Fetest in the attempt of plotting the sine wave data on > > the history page on the web server. However each time we've tried running a new > > plot we have come across the error of 'no data' from the variables. In the > > status page we are clearly obtaining data from the frontend and it is updating > > the variable as expected in SLOW. > > > > When setting up MIDAS we managed to produce a history plot from Fetest but are > > unable to do so any longer. We did have a go at modifying the Fetest code but > > created a backup before doing so and are now running the original backup. > > > > What could be causing the Fetest data not to be showing in the history plot? > > Is the logger running? (this application is handling the history data). > If yes: Did you change the variable names? If yes: restart the logger.
Draft	26 Jul 2019	Hassan	Bug Report	Fetest History Plot
=================================================================================== [lm17773@it038146 ~]$ cd /opt/midas_software/midas/bin/ [lm17773@it038146 bin]$ fetest Frontend name : fetest Event buffer size : 10485760 User max event size : 4194304 User max frag. size : 4194304 # of events per buffer : 2 Connect to experiment sampleexpt... [fetest,ERROR] [odb.cxx:1646:db_open_database,ERROR] Removed ODB client 'Logger', index 1 because process pid 22659 does not exists [fetest,ERROR] [odb.cxx:1646:db_open_database,ERROR] Removed ODB client 'mhttpd', index 2 because process pid 20257 does not exists [fetest,INFO] Removed open record flag from "/Experiment/Security/RPC hosts/Allowed hosts" [fetest,INFO] Removed exclusive access mode from "/Experiment/Security/RPC hosts/Allowed hosts" [fetest,INFO] Removed open record flag from "/Experiment/Security/mhttpd hosts/Allowed hosts" [fetest,INFO] Removed exclusive access mode from "/Experiment/Security/mhttpd hosts/Allowed hosts" [fetest,INFO] Removed open record flag from "/Logger/Channels/0/Settings" [fetest,INFO] Removed exclusive access mode from "/Logger/Channels/0/Settings" [fetest,INFO] Removed open record flag from "/Logger/Channels/0/Statistics" [fetest,INFO] Removed exclusive access mode from "/Logger/Channels/0/Statistics" [fetest,INFO] Removed open record flag from "/Logger/History" [fetest,INFO] Removed exclusive access mode from "/Logger/History" [fetest,INFO] Removed open record flag from "/Sequencer/State" [fetest,INFO] Removed exclusive access mode from "/Sequencer/State" [fetest,INFO] Removed open record flag from "/History/LoggerHistoryChannel" [fetest,INFO] Removed exclusive access mode from "/History/LoggerHistoryChannel" [fetest,INFO] Removed open record flag from "/Equipment/slow/Variables" [fetest,INFO] Removed exclusive access mode from "/Equipment/slow/Variables" [fetest,INFO] Removed open record flag from "/Equipment/Trigger/Statistics/Events per sec." [fetest,INFO] Removed exclusive access mode from "/Equipment/Trigger/Statistics/Events per sec." [fetest,INFO] Removed open record flag from "/Equipment/Trigger/Statistics/kBytes per sec." [fetest,INFO] Removed exclusive access mode from "/Equipment/Trigger/Statistics/kBytes per sec." [fetest,INFO] Removed open record flag from "/Equipment/Periodic/Variables" [fetest,INFO] Removed exclusive access mode from "/Equipment/Periodic/Variables" [fetest,INFO] Removed open record flag from "/Equipment/Scaler/Variables" [fetest,INFO] Removed exclusive access mode from "/Equipment/Scaler/Variables" [fetest,INFO] Corrected 12 ODB entries [fetest,INFO] Deleted entry '/System/Clients/20257' for client 'mhttpd' because it is not connected to ODB OK Init hardware...frontend_init! Event size set to 10240 bytes Ring buffer wait sleep 1 ms OK time 1564130782, data 91.354546 time 1564130783, data 93.358040 time 1564130784, data 95.105652 time 1564130785, data 96.592583 time 1564130786, data 97.814758 time 1564130787, data 98.768837 time 1564130788, data 99.452187 time 1564130789, data 99.862953 time 1564130790, data 100.000000 time 1564130791, data 99.862953 Warning: bank RND4 has zero size time 1564130792, data 99.452187 time 1564130793, data 98.768837 time 1564130794, data 97.814758 time 1564130795, data 96.592583 Received break. Aborting... frontend_exit! Frontend shut down. [lm17773@it038146 bin]$ ================================================================================= > > Hi, > > > > We've been trying to run Fetest in the attempt of plotting the sine wave data on > > the history page on the web server. However each time we've tried running a new > > plot we have come across the error of 'no data' from the variables. In the > > status page we are clearly obtaining data from the frontend and it is updating > > the variable as expected in SLOW. > > > > When setting up MIDAS we managed to produce a history plot from Fetest but are > > unable to do so any longer. We did have a go at modifying the Fetest code but > > created a backup before doing so and are now running the original backup. > > > > What could be causing the Fetest data not to be showing in the history plot? > > Is the logger running? (this application is handling the history data). > If yes: Did you change the variable names? If yes: restart the logger.
1636	26 Jul 2019	Hassan	Bug Report	Fetest History Plot
Hi, our logger was running. I have tried restarting mlogger (even though we haven't changed variable names). We ran the following commands one after another and still no luck with history plot. Is there anything else that could be causing these problems? Kind regards, Hassan ================================================================================== [lm17773@it038146 ~]$ cd /opt/midas_software/midas/bin/ [lm17773@it038146 bin]$ mhttpd [mhttpd,ERROR] [odb.cxx:1646:db_open_database,ERROR] Removed ODB client 'mhttpd', index 0 because process pid 20094 does not exists [mhttpd,ERROR] [odb.cxx:1646:db_open_database,ERROR] Removed ODB client 'Logger', index 1 because process pid 20214 does not exists [mhttpd,INFO] Removed open record flag from "/Experiment/Security/RPC hosts/Allowed hosts" [mhttpd,INFO] Removed exclusive access mode from "/Experiment/Security/RPC hosts/Allowed hosts" [mhttpd,INFO] Removed open record flag from "/Experiment/Security/mhttpd hosts/Allowed hosts" [mhttpd,INFO] Removed exclusive access mode from "/Experiment/Security/mhttpd hosts/Allowed hosts" [mhttpd,INFO] Removed open record flag from "/Logger/History" [mhttpd,INFO] Removed exclusive access mode from "/Logger/History" [mhttpd,INFO] Removed open record flag from "/Sequencer/State" [mhttpd,INFO] Removed exclusive access mode from "/Sequencer/State" [mhttpd,INFO] Removed open record flag from "/History/LoggerHistoryChannel" [mhttpd,INFO] Removed exclusive access mode from "/History/LoggerHistoryChannel" [mhttpd,INFO] Removed open record flag from "/Equipment/slow/Variables" [mhttpd,INFO] Removed exclusive access mode from "/Equipment/slow/Variables" [mhttpd,INFO] Removed open record flag from "/Equipment/Trigger/Statistics/Events per sec." [mhttpd,INFO] Removed exclusive access mode from "/Equipment/Trigger/Statistics/Events per sec." [mhttpd,INFO] Removed open record flag from "/Equipment/Trigger/Statistics/kBytes per sec." [mhttpd,INFO] Removed exclusive access mode from "/Equipment/Trigger/Statistics/kBytes per sec." [mhttpd,INFO] Removed open record flag from "/Equipment/Periodic/Variables" [mhttpd,INFO] Removed exclusive access mode from "/Equipment/Periodic/Variables" [mhttpd,INFO] Removed open record flag from "/Equipment/Scaler/Variables" [mhttpd,INFO] Removed exclusive access mode from "/Equipment/Scaler/Variables" [mhttpd,INFO] Corrected 10 ODB entries [mhttpd,INFO] Deleted entry '/System/Clients/20094' for client 'mhttpd' because it is not connected to ODB Mongoose web server will use SSL certificate file "/home/lm17773/online/ssl_cert.pem" Mongoose web server will use authentication realm "sampleexpt", password file "/home/lm17773/online/htpasswd.txt" mongoose web server is redirecting HTTP port 8080 to https://it038146.users.bris.ac.uk:8443 mongoose web server is listening on the HTTP port 8080 mongoose web server is listening on the HTTPS port 8443 ==================================================================================== [lm17773@it038146 bin]$ mlogger [Logger,INFO] Deleted entry '/System/Clients/20214' for client 'Logger' because it is not connected to ODB Log directory is /home/lm17773/online/ Data directory is same as Log unless specified in /Logger/channels/ History directory is same as Log unless specified in /Logger/history/ ELog directory is same as Log SQL database is localhost/sampleexpt/Runlog MIDAS logger started. Stop with "!" ==================================================================================== [lm17773@it038146 bin]$ fetest Frontend name : fetest Event buffer size : 10485760 User max event size : 4194304 User max frag. size : 4194304 # of events per buffer : 2 Connect to experiment sampleexpt... OK Init hardware...frontend_init! Event size set to 10240 bytes Ring buffer wait sleep 1 ms OK time 1564131394, data 97.814758 time 1564131395, data 96.592583 time 1564131396, data 95.105652 time 1564131397, data 93.358040 time 1564131398, data 91.354546 time 1564131399, data 89.100655 time 1564131400, data 86.602539 time 1564131401, data 83.867058 time 1564131402, data 80.901703 time 1564131403, data 77.714592 Warning: bank RND4 has zero size time 1564131404, data 74.314484 time 1564131405, data 70.710678 time 1564131406, data 66.913063 time 1564131407, data 62.932041 ==================================================================================== > > Hi, > > > > We've been trying to run Fetest in the attempt of plotting the sine wave data on > > the history page on the web server. However each time we've tried running a new > > plot we have come across the error of 'no data' from the variables. In the > > status page we are clearly obtaining data from the frontend and it is updating > > the variable as expected in SLOW. > > > > When setting up MIDAS we managed to produce a history plot from Fetest but are > > unable to do so any longer. We did have a go at modifying the Fetest code but > > created a backup before doing so and are now running the original backup. > > > > What could be causing the Fetest data not to be showing in the history plot? > > Is the logger running? (this application is handling the history data). > If yes: Did you change the variable names? If yes: restart the logger.
315	26 Oct 2006	Hans Fynbo	Forum	Setup of Ortec ADC AD413A in MIDAS
We are new to MIDAS and try to setup a simple system with one ortec camac ADC AD413A and the hytec1331 controler. Has anyone used this module in MIDAS we would be grateful for the corresponding frontend.c etc. It would be very useful to have somewhere examples of files used by various experiments in addition to the example files provided in the installation. Best regards, Hans
2472	21 Apr 2023	Grzegorz Nieradka	Forum	Setup Midas with Caen vx2740 - ask for help
I'm trying to setup Midas with the Caen vx2740 VME digitizer board. As the backend driver I used the software from Darkside located here: https://bitbucket.org/ttriumfdaq/dsproto_vx2740/src/develop/ They implemented some helpers program and one from them should diagnose correct running of digitizer. But when I'm trying to run example program "vx2740_readout_test" I have segmentation fault: Thread 1 "vx2740_readout_" received signal SIGSEGV, Segmentation fault. 0x00005555555c2ee1 in rpc_register_function (id=id@entry=18000, func=func@entry=0x5555555a2790 <jrpc_helper(int, void)>) at /home/astrocent/workspace/packages/midas/src/midas.cxx:11947 During the calling this program I have running mhttpd, mlogger and the backend for vx2740 from the repository. I'm not able to find documentation what is purpose of the RPC? Could someone give any indicators how I can start debug this behavior? Or there is some documentation about the RPC? I'm freshman in the Midas world, so at this moment everything seems for me very complicated - and I'm learning by doing. Regards, Grzegorz The backtrace from gdb which indicates the function in Midas package: #0 0x00005555555c2ee1 in rpc_register_function (id=id@entry=18000, func=func@entry=0x5555555a2790 <jrpc_helper(int, void)>) at /home/astrocent/workspace/packages/midas/src/midas.cxx:11947 #1 0x00005555555c2f12 in cm_register_function (id=id@entry=18000, func=func@entry=0x5555555a2790 <jrpc_helper(int, void**)>) at /home/astrocent/workspace/packages/midas/src/midas.cxx:5840 #2 0x00005555555a26f6 in VX2740GroupFrontend::init (this=this@entry=0x7fffffffcba0, group_idx=group_idx@entry=-1, hDB=hDB@entry=0, enable_jrpc=enable_jrpc@entry=true) at /home/astrocent/workspace/packages/ttriumfdaq-dsproto_vx2740-8122058cacd1/vx2740_fe_class.cxx:134 #3 0x000055555557e492 in do_fe (board_name=..., is_scope=<optimized out>) at /home/astrocent/workspace/packages/ttriumfdaq-dsproto_vx2740-8122058cacd1/vx2740_readout_test.cxx:185 #4 0x000055555557adc9 in main (argc=<optimized out>, argv=0x7fffffffd1f8) at /home/astrocent/workspace/packages/ttriumfdaq-dsproto_vx2740-8122058cacd1/vx2740_readout_test.cxx:253
2725	18 Mar 2024	Grzegorz Nieradka	Bug Report	Midas (manalyzer) + ROOT 6.31/01 - compilation error
I tried to update MIDAS installation on Ubuntu 22.04.1 to the latest commit at the bitbucket. I have update the ROOT from source the latest version ROOT 6.31/01. During the MIDAS compilation I have error: /usr/bin/ld: some_path_to_ROOT/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30' The longer version of this error is below. Has anybody knows some simple solution of this error? Thanks, GN Consolidate compiler generated dependencies of target manalyzer_main [ 32%] Building CXX object manalyzer/CMakeFiles/manalyzer_main.dir/manalyzer_main.cxx.o [ 33%] Linking CXX static library libmanalyzer_main.a [ 33%] Built target manalyzer_main Consolidate compiler generated dependencies of target manalyzer_test.exe [ 33%] Building CXX object manalyzer/CMakeFiles/manalyzer_test.exe.dir/manalyzer_main.cxx.o [ 34%] Linking CXX executable manalyzer_test.exe /usr/bin/ld: /home/astrocent/workspace/root/root_install/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30' collect2: error: ld returned 1 exit status make[2]: * [manalyzer/CMakeFiles/manalyzer_test.exe.dir/build.make:124: manalyzer/manalyzer_test.exe] Error 1 make[1]: * [CMakeFiles/Makefile2:780: manalyzer/CMakeFiles/manalyzer_test.exe.dir/all] Error 2
2727	19 Mar 2024	Grzegorz Nieradka	Bug Report	Midas (manalyzer) + ROOT 6.31/01 - compilation error
Dear Konstantin, Thank you for your interest in my problem. What I did: 1. I installed the latest ROOT from source according tho the manual, exactly as in this webpage (https://root.cern/install/). ROOT sems work correctly, .demo from it is works and some example file too. The manalyzer is not linking with this ROOT version installed from source. 2. I downgraded the ROOT to the lower version (6.30.04): git checkout -b v6-30-04 v6-30-04 ROOT seems compiled, installed and run correctly. The manalyzer, from the MIDAS is not linked. 3. I downoladed the latest version of ROOT: https://root.cern/download/root_v6.30.04.Linux-ubuntu22.04-x86_64-gcc11.4.tar.gz and I installed it simple by tar: tar -xzvf root_... ------------------------------------------------------------------ \| Welcome to ROOT 6.30/04 https://root.cern \| \| (c) 1995-2024, The ROOT Team; conception: R. Brun, F. Rademakers \| \| Built for linuxx8664gcc on Jan 31 2024, 10:01:37 \| \| From heads/master@tags/v6-30-04 \| \| With c++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 \| \| Try '.help'/'.?', '.demo', '.license', '.credits', '.quit'/'.q' \| ------------------------------------------------------------------ Again the ROOT sems work properly, the .demo from it is working, and example file are working too. Manalyzer from MIDAS is failed to linking. 4. The midas with the option: cmake -D NO_ROOT=ON .. is compliling, linking and even working. 5. When I try to build MIDAS with ROOT support threre is error: [ 33%] Linking CXX executable manalyzer_test.exe /usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30 I'm trying to attach files: cmake-midas-root -> My configuration of compiling MIDAS with ROOT make-cmake-midas -> output of my the command make cmake in MIDAS directory make-cmake-k -> output of my the command make cmake -k in MIDAS directory And I'm stupid at this moment. Regards, Grzegorz Nieradka
2730	28 Mar 2024	Grzegorz Nieradka	Bug Report	Midas (manalyzer) + ROOT 6.31/01 - compilation error
I found solution for my trouble. With MIDAS and ROOT everything is OK, the trobule was with my Ubuntu enviroment. In this case the trobule was caused by earlier installed anaconda and hardcoded path to anaconda libs folder in PATH enviroment variable. In anaconda lib folder I have the libstdc++.so.6.0.29 and the hardcoded path to this folder was added during the linking, by ld program, after the standard path location of libstdc++. So the linker tried to link to this version of libstdc++. When I removed the path for anaconda libs from enviroment and the standard libs location is /usr/lib/x86_64-linux-gnu/ and I have the libstdc++.so.6.0.32 version of stdc++ library everything is compiling and linking smoothly without any errors. Additionaly, everything works smoothly even with the newest ROOT version 6.30/04 compiled from source. Thanks for help. BTW. I would like to take this opportunity to wish everyone a happy Easter and tasty eggs! Regards, Grzegorz Nieradka
236	02 Dec 2005	Greg Hackman	Info	MIDAS on Cygwin
If you want to run MIDAS on Cygwin, make sure you have cygserver running. First set a Windows system environment variable CYGWIN=server. This is best done through the Control Panel -> System -> Advanced -> Environment Variables. Then run /usr/bin/cygserver-config in a Cygwin console window. Then reboot. After that your MIDAS executables should run properly. If cygserver is not running, one (obvious) symptom is that odbedit fails immediately with a "Bad system call" error. I've only tested this so far with odbedit and an offline analyzer that generates histograms in the same structure . Both of those work properly.
790	09 Jun 2012	Greg Christian	Bug Report	_net_send_buffer realloc
In midas.c, I noticed that memory is only allocated to the global buffer _net_send_buffer by calling realloc() from within the function resize_net_send_buffer() (at least this was the only place I could find allocation to _net_send_buffer happening). This can cause problems for a couple of reasons: 1) _net_send_buffer is not set to NULL when declared. To my understanding, this makes the first call to realloc(_net_send_buffer, /size/) undefined. When passed a pointer that has not previously been allocated, realloc() acts like malloc() only if the pointer equal to NULL. Otherwise, the behavior is undefined and usually causes a crash. 2) cm_disconect_experiment() calls free(_net_send_buffer) but does not set its value to NULL. Thus if a client tries to include more than one connect...disconnect cycle within an application, there is undefined behavior the next time realloc(_net_send_buffer, ...) gets called. I think that any potential allocation issues involving _net_send_buffer could be solved by: 1) Initializing _net_send_buffer to NULL. 2) In cm_disconnect_experiment(), changing > M_FREE(_net_send_buffer); to > M_FREE(_net_send_buffer); > _net_send_buffer = NULL;
792	10 Jun 2012	Greg Christian	Bug Report	_net_send_buffer realloc
> > In midas.c, ... > > > > 1) _net_send_buffer is not set to NULL when declared. > > _net_send_buffer is a global variable. All global variables are automatically initialized to zero before the program > starts. > > static charx; // = NULL; is redundant > chary=realloc(x, 100); // x is NULL, usage is correct > Ah,okay. I was not aware of this feature of global variables. > > 2) cm_disconect_experiment() calls free(_net_send_buffer) but does not set its > > value to NULL. > > My copy of midas.c (svn rev 5256) sets _net_send_buffer to NULL: > > if (_net_send_buffer_size > 0) { > M_FREE(_net_send_buffer); > _net_send_buffer_size = 0; > } > > What version of midas do you have? (svn info .) > > K.O. I have version 5256 also (matches what you posted), but I only see _net_send_buffer_size being set to 0, not _net_send_buffer itself. In midas.h, M_FREE(x) only expands to free(x) if _MEM_DBG is not defined.
2387	30 Apr 2022	Giovanni Mazzitelli	Forum	S3 Object Storage
Dear all, We are storing raw MIDAS files to S3 Object Storage, but MIDAS file are not optimised for readout from such kind of storage. There is any work around on evolution of midas raw output or, beyond simulated posix fs, to develop midas python library optimised to stream data from S3 (is not really clear to me if this is possible).
2393	01 May 2022	Giovanni Mazzitelli	Forum	S3 Object Storage
> > We are storing raw MIDAS files to S3 Object Storage, but MIDAS file are not > > optimised for readout from such kind of storage. There is any work around on > > evolution of midas raw output or, beyond simulated posix fs, to develop midas > > python library optimised to stream data from S3 (is not really clear to me if this > > is possible). > > We have plans for adding S3 object storage support to lazylogger, but have not gotten > around to it yet. > > We do not plan to add this in mlogger. mlogger works well for writing data to locally- > attached storage (local ext4, XFS, ZFS) but always runs into problems with timeouts and > delays when writing to anything network-attached (even writing to NFS). > > I envision that each midas raw data file (mid.gz or mid.lz4 or mid.bz2) will > be stored as an S3 object and there will be some kind of directory object > to map object ids to run and subrun numbers. > > Choice of best file size is open, normally we use subruns to limit file size to 1-2 > Gbytes. If cloud storage prefers some other object size, we can easily to up to 10 > Gbytes and down to "a few megabytes" (ODB dumps will have to be turned off for this). > > Other than that, in your view, what else is needed to optimize midas files for storage > in the Amazon S3 could? > > P.S. For reading files from the cloud, code needs to be written and added to > midasio/midasio.cxx, for example, see the code that is already there for reading ssh- > attached files and dcache/dccp-attached files. (CERN EOS files can be read directly > from POSIX mount point /eos). > > K.O. thanks, actually a I made a small work around with python boto3 library with file of any size (with the obviously limitation of opportunity and time to wait) eg: key = 'TMP/run00060.mid.gz' aws_session = creds.assumed_session("infncloud-iam") s3 = aws_session.client('s3', endpoint_url="https://minio.cloud.infn.it/", config=boto3.session.Config(signature_version='s3v4'),verify=True) s3_obj = s3.get_object(Bucket='cygno-data',Key=key) buf = BytesIO(s3_obj["Body"]._raw_stream.data) for event in MidasSream(gzip.GzipFile(fileobj=buf)): if event.header.is_midas_internal_event(): print("Saw a special event") continue bank_names = ", ".join(b.name for b in event.banks.values()) print("Event # %s of type ID %s contains banks %s" % (event.header.serial_number, event.header.event_id, bank_names)) .... where in MidasSream I just bypass the open, and the code work, but obviously in this way I need to have all the buffer in memory and it take time get all the buffer. I was interested to understand if some one have already develop the stream event by event (better in python but not mandatory). I'll look to the code you underline. Thanks, G.
2493	01 May 2023	Giovanni Mazzitelli	Bug Report	python issue with mathplot lib vs odb query
Ciao, we have a very strange issue with python lib with client.odb_get("/") function when running as midas process and matplotlib is used. we are developing a remote console by means of sending via kafka producer the odb, camera image and pmt waveforms, in the INFN cloud where grafana make available data for non expert shifters, as well as sending midas events for online reconstruction to the htcondr queue on cloud. The process work perfectly and allow use to parallelise to standard midas pipeline for file production, ecc the online monitoring and data processing where we have computing resources (our DAQ is underground at LNGS). Part of the work will be presented next weak at CHEP the full code is available at https://github.com/CYGNUS- RD/middleware/blob/master/dev/event_producer_s3.py but to get the strange behaviour I report here a test script: ---- def main(verbose=False): from matplotlib import pyplot as plt import time import midas import midas.client client = midas.client.MidasClient("middleware") buffer_handle = client.open_event_buffer("SYSTEM",None,1000000000) request_id = client.register_event_request(buffer_handle, sampling_type = 2) fpath = os.path.dirname(os.path.realpath(sys.argv[0])) while True: # odb = client.odb_get("/") if verbose: print(odb) start1 = time.time() client.communicate(10) time.sleep(1) client.deregister_event_request(buffer_handle, request_id) client.disconnect() ---- if I run it as cli interactivity including or not matplotlib the everything si ok. As I run it as midas "program" I get: ----- Traceback (most recent call last): File "/home/standard/daq/middleware/dev/test_midas_error.py", line 48, in <module> main(verbose=options.verbose) File "/home/standard/daq/middleware/dev/test_midas_error.py", line 29, in main odb = client.odb_get("/") File "/home/standard/packages/midas/python/midas/client.py", line 354, in odb_get retval = midas.safe_to_json(buf.value, use_ordered_dict=True) File "/home/standard/packages/midas/python/midas/__init__.py", line 552, in safe_to_json return json.loads(decoded, strict=False, object_pairs_hook=collections.OrderedDict) File "/usr/lib/python3.8/json/__init__.py", line 370, in loads return cls(**kw).decode(s) File "/usr/lib/python3.8/json/decoder.py", line 337, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "/usr/lib/python3.8/json/decoder.py", line 353, in raw_decode obj, end = self.scan_once(s, idx) json.decoder.JSONDecodeError: Expecting property name enclosed in double quotes: line 300 column 26 (char 17535) ---- if I comment out the import of matplotlib every think works perfectly again also as midas program. it seams that there is a difference between the to way of use the code, and that is sufficient the call to matplotlib to corrupt in some way the odb. any ideas?
Draft	01 May 2023	Giovanni Mazzitelli	Bug Report	python issue with mathplot lib vs odb query
> > it seams that there is a difference between the to way of use the code, and that > > is sufficient the call to matplotlib to corrupt in some way the odb. any ideas? > > I can't reproduce this on my machines, so this is going to be fun to debug! > > Can you try running the program below please? It takes the important bits from odb_get() but prints out the string before we try to parse it as JSON. Feel free to send me the output via email (bsmith@triumf.ca) if you don't want to post your entire ODB dump in the elog. > > > > > import sys > import os > import time > import midas > import midas.client > import ctypes > > def debug_get(client): > c_path = ctypes.create_string_buffer(b"/") > hKey = ctypes.c_int() > client.lib.c_db_find_key(client.hDB, 0, c_path, ctypes.byref(hKey)) > > buf = ctypes.c_char_p() > bufsize = ctypes.c_int() > bufend = ctypes.c_int() > > client.lib.c_db_copy_json_save(client.hDB, hKey, ctypes.byref(buf), ctypes.byref(bufsize), ctypes.byref(bufend)) > > print("-" * 80) > print("FULL DUMP") > print("-" * 80) > print(buf.value) > print("-" * 80) > print("Chars 17000-18000") > print("-" * 80) > print(buf.value[17000:18000]) > print("-" * 80) > > as_dict = midas.safe_to_json(buf.value, use_ordered_dict=True) > > client.lib.c_free(buf) > > return as_dict > > def main(verbose=False): > client = midas.client.MidasClient("middleware") > buffer_handle = client.open_event_buffer("SYSTEM",None,1000000000) > request_id = client.register_event_request(buffer_handle, sampling_type = 2) > > fpath = os.path.dirname(os.path.realpath(sys.argv[0])) > > while True: > # odb = client.odb_get("/") > odb = debug_get(client) > > if verbose: > print(odb) > start1 = time.time() > > client.communicate(10) > time.sleep(1) > > > client.deregister_event_request(buffer_handle, request_id) > > client.disconnect() > > if __name__ == "__main__": > main() Thank you! if I added the mat
2496	01 May 2023	Giovanni Mazzitelli	Bug Report	python issue with mathplot lib vs odb query
> > it seams that there is a difference between the to way of use the code, and that > > is sufficient the call to matplotlib to corrupt in some way the odb. any ideas? > > I can't reproduce this on my machines, so this is going to be fun to debug! > > Can you try running the program below please? It takes the important bits from odb_get() but prints out the string before we try to parse it as JSON. Feel free to send me the output via email (bsmith@triumf.ca) if you don't want to post your entire ODB dump in the elog. Thank you! if I added the matplotlib as follow: #!/usr/bin/env python3 import sys import os import time import midas import midas.client import ctypes from matplotlib import pyplot as plt def debug_get(client): c_path = ctypes.create_string_buffer(b"/") hKey = ctypes.c_int() client.lib.c_db_find_key(client.hDB, 0, c_path, ctypes.byref(hKey)) buf = ctypes.c_char_p() bufsize = ctypes.c_int() bufend = ctypes.c_int() client.lib.c_db_copy_json_save(client.hDB, hKey, ctypes.byref(buf), ctypes.byref(bufsize), ctypes.byref(bufend)) print("-" * 80) print("FULL DUMP") print("-" * 80) print(buf.value) print("-" * 80) print("Chars 17000-18000") print("-" * 80) print(buf.value[17000:18000]) print("-" * 80) as_dict = midas.safe_to_json(buf.value, use_ordered_dict=True) client.lib.c_free(buf) return as_dict def main(verbose=False): client = midas.client.MidasClient("middleware") buffer_handle = client.open_event_buffer("SYSTEM",None,1000000000) request_id = client.register_event_request(buffer_handle, sampling_type = 2) fpath = os.path.dirname(os.path.realpath(sys.argv[0])) while True: # odb = client.odb_get("/") odb = debug_get(client) if verbose: print(odb) start1 = time.time() client.communicate(10) time.sleep(1) client.deregister_event_request(buffer_handle, request_id) client.disconnect() if __name__ == "__main__": from optparse import OptionParser parser = OptionParser(usage='usage: %prog\t ') parser.add_option('-v','--verbose', dest='verbose', action="store_true", default=False, help='verbose output;'); (options, args) = parser.parse_args() main(verbose=options.verbose) then tested the code in interactive mode without any error. as soon as I submit as midas "Program" I get the attached output. thank you again, Giovanni
2499	01 May 2023	Giovanni Mazzitelli	Bug Report	python issue with mathplot lib vs odb query
> > Looks like a localisation issue. Your floats are formatted as "6,6584e+01", whereas the JSON decoder expects "6.6584e+01". > > This should be fixed in the latest commit to the midas develop branch. The JSON specification requires a dot for the decimal separator, so we must ignore the user's locale when formatting floats/doubles for JSON. > > I've tested the fix on my machine by manually changing the locale, and also added an automated test in the python directory. Thanks very macth Ben, so if I understand correctly we have to update MIDAS to latest develop branch available? can you sand me the link to be sure of install the right update. can you also tell me how you fix manually? we are restarting and then well be difficult install and makes updete. thank you again, regards, Giovanni
1498	16 Mar 2019	Gennaro Tortone	Forum	assertion failed
Hi, I'm developing a Slow Control equipment on a Linux board that send data on a remote server running 'mserver'; the build goes fine, but when I run the executable it seems that an assertion in midas.c failed: [dfe01,INFO] Slow control equipment initialized dfe: src/midas.c:838: cm_msg_flush_buffer: Assertion `rp[3]=='_'' failed. if I remove line 838 from midas.c (fixing message length) the problem disappear... Regards, Gennaro

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