| ID |
Date |
Author |
Topic |
Subject |
|
2727
|
19 Mar 2024 |
Grzegorz Nieradka | Bug Report | Midas (manalyzer) + ROOT 6.31/01 - compilation error | Dear Konstantin,
Thank you for your interest in my problem.
What I did:
1. I installed the latest ROOT from source according tho the manual,
exactly as in this webpage (https://root.cern/install/).
ROOT sems work correctly, .demo from it is works and some example
file too. The manalyzer is not linking with this ROOT version installed from source.
2. I downgraded the ROOT to the lower version (6.30.04):
git checkout -b v6-30-04 v6-30-04
ROOT seems compiled, installed and run correctly. The manalyzer,
from the MIDAS is not linked.
3. I downoladed the latest version of ROOT:
https://root.cern/download/root_v6.30.04.Linux-ubuntu22.04-x86_64-gcc11.4.tar.gz
and I installed it simple by tar: tar -xzvf root_...
------------------------------------------------------------------
| Welcome to ROOT 6.30/04 https://root.cern |
| (c) 1995-2024, The ROOT Team; conception: R. Brun, F. Rademakers |
| Built for linuxx8664gcc on Jan 31 2024, 10:01:37 |
| From heads/master@tags/v6-30-04 |
| With c++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 |
| Try '.help'/'.?', '.demo', '.license', '.credits', '.quit'/'.q' |
------------------------------------------------------------------
Again the ROOT sems work properly, the .demo from it is working, and example file
are working too. Manalyzer from MIDAS is failed to linking.
4. The midas with the option: cmake -D NO_ROOT=ON ..
is compliling, linking and even working.
5. When I try to build MIDAS with ROOT support threre is error:
[ 33%] Linking CXX executable manalyzer_test.exe
/usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to
`std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30
I'm trying to attach files:
cmake-midas-root -> My configuration of compiling MIDAS with ROOT
make-cmake-midas -> output of my the command make cmake in MIDAS directory
make-cmake-k -> output of my the command make cmake -k in MIDAS directory
And I'm stupid at this moment.
Regards,
Grzegorz Nieradka |
| Attachment 1: cmake-midas-root
|
- MIDAS: cmake version: 3.22.1
-- The C compiler identification is GNU 11.4.0
-- The CXX compiler identification is GNU 11.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- MIDAS: Setting build type to 'RelWithDebInfo' as non was specified
-- MIDAS: Curent build type is 'RelWithDebInfo'
-- MIDAS: Disabled address sanitizer
-- MIDAS: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
-- Found Vdt: /home/astrocent/workspace/root/include (found version "0.4")
-- MIDAS: Found ROOT version 6.30.04 in /home/astrocent/workspace/root
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
-- MIDAS: Found ZLIB version 1.2.11
-- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "7.81.0")
-- MIDAS: Found LibCURL version 7.81.0
-- MIDAS: MBEDTLS not found
-- MIDAS: Found MySQL version 8.0.36
-- MIDAS: MySQL CFLAGS: -I/usr/include/mysql and libs: -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm
-- MIDAS: Found PostgreSQL version PostgreSQL 12.9
-- MIDAS: PostgresSQL include: /home/astrocent/anaconda3/include and libs: /home/astrocent/anaconda3/lib
-- MIDAS: ODBC not found
-- Could NOT find SQLite3 (missing: SQLite3_INCLUDE_DIR SQLite3_LIBRARY)
-- MIDAS: SQLITE not found
-- MIDAS (msysmon): NVIDIA CUDA libs not found
-- MIDAS (msysmon): Found LM_SENSORS
-- MIDAS (mlogger): OpenCV not found, (no rtsp camera support))
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found Git: /usr/bin/git (found version "2.34.1")
-- MSCB: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
-- manalyzer: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
-- manalyzer: Building as a subproject of MIDAS
-- manalyzer: Using ROOT: flags: -std=c++17;-pipe;-fsigned-char;-pthread and includes: /home/astrocent/workspace/root/include
-- Found Python3: /usr/bin/python3.10 (found version "3.10.12") found components: Interpreter
-- example_experiment: Building as a subproject of MIDAS
-- example_experiment: MIDASSYS: /home/astrocent/workspace/packages/midas
-- example_experiment: Using ROOT: flags: -std=c++17;-pipe;-fsigned-char;-pthread and includes: /home/astrocent/workspace/root/include
-- example_experiment: Found ROOT version 6.30.04
-- Configuring done
-- Generating done
-- Build files have been written to: /home/astrocent/workspace/packages/midas/build
|
| Attachment 2: make-cmake-midas
|
astrocent@astrocent-desktop:~/workspace/packages/midas$ make cmake
mkdir -p build
cd build; cmake .. -DCMAKE_EXPORT_COMPILE_COMMANDS=1 -DCMAKE_TARGET_MESSAGES=OFF; make --no-print-directory VERBOSE=1 all install | 2>&1 grep -v -e ^make -e ^Dependee -e cmake_depends -e ^Scanning -e cmake_link_script -e cmake_progress_start -e cmake_clean_target -e build.make
-- MIDAS: cmake version: 3.22.1
-- MIDAS: Setting build type to 'RelWithDebInfo' as non was specified
-- MIDAS: Curent build type is 'RelWithDebInfo'
-- MIDAS: Disabled address sanitizer
-- MIDAS: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
-- MIDAS: Found ROOT version 6.30.04 in /home/astrocent/workspace/root
-- MIDAS: Found ZLIB version 1.2.11
-- MIDAS: Found LibCURL version 7.81.0
-- MIDAS: MBEDTLS not found
-- MIDAS: Found MySQL version 8.0.36
-- MIDAS: MySQL CFLAGS: -I/usr/include/mysql and libs: -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm
-- MIDAS: Found PostgreSQL version PostgreSQL 12.9
-- MIDAS: PostgresSQL include: /home/astrocent/anaconda3/include and libs: /home/astrocent/anaconda3/lib
-- MIDAS: ODBC not found
-- Could NOT find SQLite3 (missing: SQLite3_INCLUDE_DIR SQLite3_LIBRARY)
-- MIDAS: SQLITE not found
-- MIDAS (msysmon): NVIDIA CUDA libs not found
-- MIDAS (msysmon): Found LM_SENSORS
-- MIDAS (mlogger): OpenCV not found, (no rtsp camera support))
-- MSCB: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
-- manalyzer: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
-- manalyzer: Building as a subproject of MIDAS
-- manalyzer: Using ROOT: flags: -std=c++17;-pipe;-fsigned-char;-pthread and includes: /home/astrocent/workspace/root/include
-- example_experiment: Building as a subproject of MIDAS
-- example_experiment: MIDASSYS: /home/astrocent/workspace/packages/midas
-- example_experiment: Using ROOT: flags: -std=c++17;-pipe;-fsigned-char;-pthread and includes: /home/astrocent/workspace/root/include
-- example_experiment: Found ROOT version 6.30.04
-- Configuring done
-- Generating done
-- Build files have been written to: /home/astrocent/workspace/packages/midas/build
/usr/bin/cmake -S/home/astrocent/workspace/packages/midas -B/home/astrocent/workspace/packages/midas/build --check-build-system CMakeFiles/Makefile.cmake 0
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cd /home/astrocent/workspace/packages/midas/include && /usr/bin/git log -n 1 --pretty=format:"%ad" >> /home/astrocent/workspace/packages/midas/include/git-revision.h.tmp
cd /home/astrocent/workspace/packages/midas/include && /usr/bin/cmake -E echo_append \ -\ >> /home/astrocent/workspace/packages/midas/include/git-revision.h.tmp
cd /home/astrocent/workspace/packages/midas/include && /usr/bin/git describe --abbrev=8 --tags --dirty | tr -d '\n' >> /home/astrocent/workspace/packages/midas/include/git-revision.h.tmp
cd /home/astrocent/workspace/packages/midas/include && /usr/bin/cmake -E echo_append \ on\ branch\ >> /home/astrocent/workspace/packages/midas/include/git-revision.h.tmp
cd /home/astrocent/workspace/packages/midas/include && /usr/bin/git rev-parse --abbrev-ref HEAD | tr -d '\n' >> /home/astrocent/workspace/packages/midas/include/git-revision.h.tmp
cd /home/astrocent/workspace/packages/midas/include && /usr/bin/cmake -E echo \" >> /home/astrocent/workspace/packages/midas/include/git-revision.h.tmp
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cd /home/astrocent/workspace/packages/midas/include && /usr/bin/cmake -E remove /home/astrocent/workspace/packages/midas/include/git-revision.h.tmp
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|
| Attachment 3: make-cmake-k
|
astrocent@astrocent-desktop:~/workspace/packages/midas$ make cmake -k
mkdir -p build
cd build; cmake .. -DCMAKE_EXPORT_COMPILE_COMMANDS=1 -DCMAKE_TARGET_MESSAGES=OFF; make --no-print-directory VERBOSE=1 all install | 2>&1 grep -v -e ^make -e ^Dependee -e cmake_depends -e ^Scanning -e cmake_link_script -e cmake_progress_start -e cmake_clean_target -e build.make
-- MIDAS: cmake version: 3.22.1
-- MIDAS: Setting build type to 'RelWithDebInfo' as non was specified
-- MIDAS: Curent build type is 'RelWithDebInfo'
-- MIDAS: Disabled address sanitizer
-- MIDAS: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
-- MIDAS: Found ROOT version 6.30.04 in /home/astrocent/workspace/root
-- MIDAS: Found ZLIB version 1.2.11
-- MIDAS: Found LibCURL version 7.81.0
-- MIDAS: MBEDTLS not found
-- MIDAS: Found MySQL version 8.0.36
-- MIDAS: MySQL CFLAGS: -I/usr/include/mysql and libs: -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm
-- MIDAS: Found PostgreSQL version PostgreSQL 12.9
-- MIDAS: PostgresSQL include: /home/astrocent/anaconda3/include and libs: /home/astrocent/anaconda3/lib
-- MIDAS: ODBC not found
-- Could NOT find SQLite3 (missing: SQLite3_INCLUDE_DIR SQLite3_LIBRARY)
-- MIDAS: SQLITE not found
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-- MIDAS (mlogger): OpenCV not found, (no rtsp camera support))
-- MSCB: CMAKE_INSTALL_PREFIX: /home/astrocent/workspace/packages/midas
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-- example_experiment: Building as a subproject of MIDAS
-- example_experiment: MIDASSYS: /home/astrocent/workspace/packages/midas
-- example_experiment: Using ROOT: flags: -std=c++17;-pipe;-fsigned-char;-pthread and includes: /home/astrocent/workspace/root/include
-- example_experiment: Found ROOT version 6.30.04
-- Configuring done
-- Generating done
-- Build files have been written to: /home/astrocent/workspace/packages/midas/build
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[ 0%] Linking CXX executable manalyzer_test.exe
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/usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30'
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cd /home/astrocent/workspace/packages/midas/build/manalyzer && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MIDAS -DHAVE_MYSQL -DHAVE_PGSQL -DHAVE_ROOT_HTTP -DHAVE_THTTP_SERVER -DHAVE_TMFE -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/manalyzer -I/home/astrocent/workspace/root/include -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -I/home/astrocent/workspace/packages/midas/manalyzer/../mvodb -I/home/astrocent/workspace/packages/midas/manalyzer/../midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -O2 -g -std=c++17 -pipe -fsigned-char -pthread -DHAVE_ROOT -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT manalyzer/CMakeFiles/manalyzer_example_flow.exe.dir/manalyzer_example_flow.cxx.o -MF CMakeFiles/manalyzer_example_flow.exe.dir/manalyzer_example_flow.cxx.o.d -o CMakeFiles/manalyzer_example_flow.exe.dir/manalyzer_example_flow.cxx.o -c /home/astrocent/workspace/packages/midas/manalyzer/manalyzer_example_flow.cxx
[ 2%] Linking CXX executable manalyzer_example_flow.exe
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/manalyzer_example_flow.exe.dir/manalyzer_example_flow.cxx.o -o manalyzer_example_flow.exe -Wl,-rpath,/home/astrocent/workspace/root/lib: libmanalyzer_main.a libmanalyzer.a ../libmidas.a -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl /home/astrocent/workspace/root/lib/libCore.so /home/astrocent/workspace/root/lib/libImt.so /home/astrocent/workspace/root/lib/libRIO.so /home/astrocent/workspace/root/lib/libNet.so /home/astrocent/workspace/root/lib/libHist.so /home/astrocent/workspace/root/lib/libGraf.so /home/astrocent/workspace/root/lib/libGraf3d.so /home/astrocent/workspace/root/lib/libGpad.so /home/astrocent/workspace/root/lib/libROOTDataFrame.so /home/astrocent/workspace/root/lib/libTree.so /home/astrocent/workspace/root/lib/libTreePlayer.so /home/astrocent/workspace/root/lib/libRint.so /home/astrocent/workspace/root/lib/libPostscript.so /home/astrocent/workspace/root/lib/libMatrix.so /home/astrocent/workspace/root/lib/libPhysics.so /home/astrocent/workspace/root/lib/libMathCore.so /home/astrocent/workspace/root/lib/libThread.so /home/astrocent/workspace/root/lib/libMultiProc.so /home/astrocent/workspace/root/lib/libROOTVecOps.so /home/astrocent/workspace/root/lib/libGui.so /home/astrocent/workspace/root/lib/libRHTTP.so /home/astrocent/workspace/root/lib/libXMLIO.so /home/astrocent/workspace/root/lib/libXMLParser.so /usr/lib/x86_64-linux-gnu/libz.so
/usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30'
collect2: error: ld returned 1 exit status
make[3]: *** [manalyzer/CMakeFiles/manalyzer_example_flow.exe.dir/build.make:124: manalyzer/manalyzer_example_flow.exe] Error 1
make[3]: Target 'manalyzer/CMakeFiles/manalyzer_example_flow.exe.dir/build' not remade because of errors.
make[2]: *** [CMakeFiles/Makefile2:820: manalyzer/CMakeFiles/manalyzer_example_flow.exe.dir/all] Error 2
[ 3%] Building CXX object manalyzer/CMakeFiles/manalyzer_example_flow_queue.exe.dir/manalyzer_example_flow_queue.cxx.o
cd /home/astrocent/workspace/packages/midas/build/manalyzer && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MIDAS -DHAVE_MYSQL -DHAVE_PGSQL -DHAVE_ROOT_HTTP -DHAVE_THTTP_SERVER -DHAVE_TMFE -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/manalyzer -I/home/astrocent/workspace/root/include -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -I/home/astrocent/workspace/packages/midas/manalyzer/../mvodb -I/home/astrocent/workspace/packages/midas/manalyzer/../midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -O2 -g -std=c++17 -pipe -fsigned-char -pthread -DHAVE_ROOT -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT manalyzer/CMakeFiles/manalyzer_example_flow_queue.exe.dir/manalyzer_example_flow_queue.cxx.o -MF CMakeFiles/manalyzer_example_flow_queue.exe.dir/manalyzer_example_flow_queue.cxx.o.d -o CMakeFiles/manalyzer_example_flow_queue.exe.dir/manalyzer_example_flow_queue.cxx.o -c /home/astrocent/workspace/packages/midas/manalyzer/manalyzer_example_flow_queue.cxx
[ 3%] Linking CXX executable manalyzer_example_flow_queue.exe
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/manalyzer_example_flow_queue.exe.dir/manalyzer_example_flow_queue.cxx.o -o manalyzer_example_flow_queue.exe -Wl,-rpath,/home/astrocent/workspace/root/lib: libmanalyzer_main.a libmanalyzer.a ../libmidas.a -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl /home/astrocent/workspace/root/lib/libCore.so /home/astrocent/workspace/root/lib/libImt.so /home/astrocent/workspace/root/lib/libRIO.so /home/astrocent/workspace/root/lib/libNet.so /home/astrocent/workspace/root/lib/libHist.so /home/astrocent/workspace/root/lib/libGraf.so /home/astrocent/workspace/root/lib/libGraf3d.so /home/astrocent/workspace/root/lib/libGpad.so /home/astrocent/workspace/root/lib/libROOTDataFrame.so /home/astrocent/workspace/root/lib/libTree.so /home/astrocent/workspace/root/lib/libTreePlayer.so /home/astrocent/workspace/root/lib/libRint.so /home/astrocent/workspace/root/lib/libPostscript.so /home/astrocent/workspace/root/lib/libMatrix.so /home/astrocent/workspace/root/lib/libPhysics.so /home/astrocent/workspace/root/lib/libMathCore.so /home/astrocent/workspace/root/lib/libThread.so /home/astrocent/workspace/root/lib/libMultiProc.so /home/astrocent/workspace/root/lib/libROOTVecOps.so /home/astrocent/workspace/root/lib/libGui.so /home/astrocent/workspace/root/lib/libRHTTP.so /home/astrocent/workspace/root/lib/libXMLIO.so /home/astrocent/workspace/root/lib/libXMLParser.so /usr/lib/x86_64-linux-gnu/libz.so
/usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30'
collect2: error: ld returned 1 exit status
make[3]: *** [manalyzer/CMakeFiles/manalyzer_example_flow_queue.exe.dir/build.make:124: manalyzer/manalyzer_example_flow_queue.exe] Error 1
make[3]: Target 'manalyzer/CMakeFiles/manalyzer_example_flow_queue.exe.dir/build' not remade because of errors.
make[2]: *** [CMakeFiles/Makefile2:847: manalyzer/CMakeFiles/manalyzer_example_flow_queue.exe.dir/all] Error 2
[ 4%] Building CXX object manalyzer/CMakeFiles/manalyzer_example_frontend.exe.dir/manalyzer_example_frontend.cxx.o
cd /home/astrocent/workspace/packages/midas/build/manalyzer && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MIDAS -DHAVE_MYSQL -DHAVE_PGSQL -DHAVE_ROOT_HTTP -DHAVE_THTTP_SERVER -DHAVE_TMFE -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/manalyzer -I/home/astrocent/workspace/root/include -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -I/home/astrocent/workspace/packages/midas/manalyzer/../mvodb -I/home/astrocent/workspace/packages/midas/manalyzer/../midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -O2 -g -std=c++17 -pipe -fsigned-char -pthread -DHAVE_ROOT -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT manalyzer/CMakeFiles/manalyzer_example_frontend.exe.dir/manalyzer_example_frontend.cxx.o -MF CMakeFiles/manalyzer_example_frontend.exe.dir/manalyzer_example_frontend.cxx.o.d -o CMakeFiles/manalyzer_example_frontend.exe.dir/manalyzer_example_frontend.cxx.o -c /home/astrocent/workspace/packages/midas/manalyzer/manalyzer_example_frontend.cxx
[ 4%] Linking CXX executable manalyzer_example_frontend.exe
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/manalyzer_example_frontend.exe.dir/manalyzer_example_frontend.cxx.o -o manalyzer_example_frontend.exe -Wl,-rpath,/home/astrocent/workspace/root/lib: libmanalyzer_main.a libmanalyzer.a ../libmidas.a -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl /home/astrocent/workspace/root/lib/libCore.so /home/astrocent/workspace/root/lib/libImt.so /home/astrocent/workspace/root/lib/libRIO.so /home/astrocent/workspace/root/lib/libNet.so /home/astrocent/workspace/root/lib/libHist.so /home/astrocent/workspace/root/lib/libGraf.so /home/astrocent/workspace/root/lib/libGraf3d.so /home/astrocent/workspace/root/lib/libGpad.so /home/astrocent/workspace/root/lib/libROOTDataFrame.so /home/astrocent/workspace/root/lib/libTree.so /home/astrocent/workspace/root/lib/libTreePlayer.so /home/astrocent/workspace/root/lib/libRint.so /home/astrocent/workspace/root/lib/libPostscript.so /home/astrocent/workspace/root/lib/libMatrix.so /home/astrocent/workspace/root/lib/libPhysics.so /home/astrocent/workspace/root/lib/libMathCore.so /home/astrocent/workspace/root/lib/libThread.so /home/astrocent/workspace/root/lib/libMultiProc.so /home/astrocent/workspace/root/lib/libROOTVecOps.so /home/astrocent/workspace/root/lib/libGui.so /home/astrocent/workspace/root/lib/libRHTTP.so /home/astrocent/workspace/root/lib/libXMLIO.so /home/astrocent/workspace/root/lib/libXMLParser.so /usr/lib/x86_64-linux-gnu/libz.so
/usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30'
collect2: error: ld returned 1 exit status
make[3]: *** [manalyzer/CMakeFiles/manalyzer_example_frontend.exe.dir/build.make:124: manalyzer/manalyzer_example_frontend.exe] Error 1
make[3]: Target 'manalyzer/CMakeFiles/manalyzer_example_frontend.exe.dir/build' not remade because of errors.
make[2]: *** [CMakeFiles/Makefile2:874: manalyzer/CMakeFiles/manalyzer_example_frontend.exe.dir/all] Error 2
[ 5%] Building CXX object manalyzer/CMakeFiles/manalyzer_example_root.exe.dir/manalyzer_example_root.cxx.o
cd /home/astrocent/workspace/packages/midas/build/manalyzer && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MIDAS -DHAVE_MYSQL -DHAVE_PGSQL -DHAVE_ROOT_HTTP -DHAVE_THTTP_SERVER -DHAVE_TMFE -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/manalyzer -I/home/astrocent/workspace/root/include -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -I/home/astrocent/workspace/packages/midas/manalyzer/../mvodb -I/home/astrocent/workspace/packages/midas/manalyzer/../midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -O2 -g -std=c++17 -pipe -fsigned-char -pthread -DHAVE_ROOT -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT manalyzer/CMakeFiles/manalyzer_example_root.exe.dir/manalyzer_example_root.cxx.o -MF CMakeFiles/manalyzer_example_root.exe.dir/manalyzer_example_root.cxx.o.d -o CMakeFiles/manalyzer_example_root.exe.dir/manalyzer_example_root.cxx.o -c /home/astrocent/workspace/packages/midas/manalyzer/manalyzer_example_root.cxx
[ 5%] Linking CXX executable manalyzer_example_root.exe
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/manalyzer_example_root.exe.dir/manalyzer_example_root.cxx.o -o manalyzer_example_root.exe -Wl,-rpath,/home/astrocent/workspace/root/lib: libmanalyzer_main.a libmanalyzer.a ../libmidas.a -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl /home/astrocent/workspace/root/lib/libCore.so /home/astrocent/workspace/root/lib/libImt.so /home/astrocent/workspace/root/lib/libRIO.so /home/astrocent/workspace/root/lib/libNet.so /home/astrocent/workspace/root/lib/libHist.so /home/astrocent/workspace/root/lib/libGraf.so /home/astrocent/workspace/root/lib/libGraf3d.so /home/astrocent/workspace/root/lib/libGpad.so /home/astrocent/workspace/root/lib/libROOTDataFrame.so /home/astrocent/workspace/root/lib/libTree.so /home/astrocent/workspace/root/lib/libTreePlayer.so /home/astrocent/workspace/root/lib/libRint.so /home/astrocent/workspace/root/lib/libPostscript.so /home/astrocent/workspace/root/lib/libMatrix.so /home/astrocent/workspace/root/lib/libPhysics.so /home/astrocent/workspace/root/lib/libMathCore.so /home/astrocent/workspace/root/lib/libThread.so /home/astrocent/workspace/root/lib/libMultiProc.so /home/astrocent/workspace/root/lib/libROOTVecOps.so /home/astrocent/workspace/root/lib/libGui.so /home/astrocent/workspace/root/lib/libRHTTP.so /home/astrocent/workspace/root/lib/libXMLIO.so /home/astrocent/workspace/root/lib/libXMLParser.so /usr/lib/x86_64-linux-gnu/libz.so
/usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30'
collect2: error: ld returned 1 exit status
make[3]: *** [manalyzer/CMakeFiles/manalyzer_example_root.exe.dir/build.make:124: manalyzer/manalyzer_example_root.exe] Error 1
make[3]: Target 'manalyzer/CMakeFiles/manalyzer_example_root.exe.dir/build' not remade because of errors.
make[2]: *** [CMakeFiles/Makefile2:901: manalyzer/CMakeFiles/manalyzer_example_root.exe.dir/all] Error 2
[ 6%] Building CXX object manalyzer/CMakeFiles/manalyzer_example_root_graphics.exe.dir/manalyzer_example_root_graphics.cxx.o
cd /home/astrocent/workspace/packages/midas/build/manalyzer && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MIDAS -DHAVE_MYSQL -DHAVE_PGSQL -DHAVE_ROOT_HTTP -DHAVE_THTTP_SERVER -DHAVE_TMFE -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/manalyzer -I/home/astrocent/workspace/root/include -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -I/home/astrocent/workspace/packages/midas/manalyzer/../mvodb -I/home/astrocent/workspace/packages/midas/manalyzer/../midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -O2 -g -std=c++17 -pipe -fsigned-char -pthread -DHAVE_ROOT -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT manalyzer/CMakeFiles/manalyzer_example_root_graphics.exe.dir/manalyzer_example_root_graphics.cxx.o -MF CMakeFiles/manalyzer_example_root_graphics.exe.dir/manalyzer_example_root_graphics.cxx.o.d -o CMakeFiles/manalyzer_example_root_graphics.exe.dir/manalyzer_example_root_graphics.cxx.o -c /home/astrocent/workspace/packages/midas/manalyzer/manalyzer_example_root_graphics.cxx
[ 6%] Linking CXX executable manalyzer_example_root_graphics.exe
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/manalyzer_example_root_graphics.exe.dir/manalyzer_example_root_graphics.cxx.o -o manalyzer_example_root_graphics.exe -Wl,-rpath,/home/astrocent/workspace/root/lib: libmanalyzer_main.a libmanalyzer.a ../libmidas.a -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl /home/astrocent/workspace/root/lib/libCore.so /home/astrocent/workspace/root/lib/libImt.so /home/astrocent/workspace/root/lib/libRIO.so /home/astrocent/workspace/root/lib/libNet.so /home/astrocent/workspace/root/lib/libHist.so /home/astrocent/workspace/root/lib/libGraf.so /home/astrocent/workspace/root/lib/libGraf3d.so /home/astrocent/workspace/root/lib/libGpad.so /home/astrocent/workspace/root/lib/libROOTDataFrame.so /home/astrocent/workspace/root/lib/libTree.so /home/astrocent/workspace/root/lib/libTreePlayer.so /home/astrocent/workspace/root/lib/libRint.so /home/astrocent/workspace/root/lib/libPostscript.so /home/astrocent/workspace/root/lib/libMatrix.so /home/astrocent/workspace/root/lib/libPhysics.so /home/astrocent/workspace/root/lib/libMathCore.so /home/astrocent/workspace/root/lib/libThread.so /home/astrocent/workspace/root/lib/libMultiProc.so /home/astrocent/workspace/root/lib/libROOTVecOps.so /home/astrocent/workspace/root/lib/libGui.so /home/astrocent/workspace/root/lib/libRHTTP.so /home/astrocent/workspace/root/lib/libXMLIO.so /home/astrocent/workspace/root/lib/libXMLParser.so /usr/lib/x86_64-linux-gnu/libz.so
/usr/bin/ld: /home/astrocent/workspace/root/lib/libRIO.so: undefined reference to `std::condition_variable::wait(std::unique_lock<std::mutex>&)@GLIBCXX_3.4.30'
collect2: error: ld returned 1 exit status
make[3]: *** [manalyzer/CMakeFiles/manalyzer_example_root_graphics.exe.dir/build.make:124: manalyzer/manalyzer_example_root_graphics.exe] Error 1
make[3]: Target 'manalyzer/CMakeFiles/manalyzer_example_root_graphics.exe.dir/build' not remade because of errors.
make[2]: *** [CMakeFiles/Makefile2:928: manalyzer/CMakeFiles/manalyzer_example_root_graphics.exe.dir/all] Error 2
[ 7%] Building CXX object progs/CMakeFiles/mserver.dir/mserver.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mserver.dir/mserver.cxx.o -MF CMakeFiles/mserver.dir/mserver.cxx.o.d -o CMakeFiles/mserver.dir/mserver.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mserver.cxx
[ 7%] Linking CXX executable mserver
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/mserver.dir/mserver.cxx.o -o mserver ../libmidas.a /usr/lib/x86_64-linux-gnu/libz.so -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl
[ 7%] Building CXX object progs/CMakeFiles/mlogger.dir/mlogger.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mlogger.dir/mlogger.cxx.o -MF CMakeFiles/mlogger.dir/mlogger.cxx.o.d -o CMakeFiles/mlogger.dir/mlogger.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mlogger.cxx
[ 8%] Linking CXX executable mlogger
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/mlogger.dir/mlogger.cxx.o -o mlogger ../libmidas.a /usr/lib/x86_64-linux-gnu/libz.so -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl
[ 9%] Building CXX object progs/CMakeFiles/mhist.dir/mhist.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mhist.dir/mhist.cxx.o -MF CMakeFiles/mhist.dir/mhist.cxx.o.d -o CMakeFiles/mhist.dir/mhist.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mhist.cxx
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cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mstat.dir/mstat.cxx.o -MF CMakeFiles/mstat.dir/mstat.cxx.o.d -o CMakeFiles/mstat.dir/mstat.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mstat.cxx
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cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/test_sleep.dir/test_sleep.cxx.o -MF CMakeFiles/test_sleep.dir/test_sleep.cxx.o.d -o CMakeFiles/test_sleep.dir/test_sleep.cxx.o -c /home/astrocent/workspace/packages/midas/progs/test_sleep.cxx
[ 24%] Linking CXX executable test_sleep
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[ 24%] Building CXX object progs/CMakeFiles/crc32c_sum.dir/crc32c_sum.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/crc32c_sum.dir/crc32c_sum.cxx.o -MF CMakeFiles/crc32c_sum.dir/crc32c_sum.cxx.o.d -o CMakeFiles/crc32c_sum.dir/crc32c_sum.cxx.o -c /home/astrocent/workspace/packages/midas/progs/crc32c_sum.cxx
[ 25%] Linking CXX executable crc32c_sum
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[ 26%] Building CXX object progs/CMakeFiles/lazylogger.dir/lazylogger.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/lazylogger.dir/lazylogger.cxx.o -MF CMakeFiles/lazylogger.dir/lazylogger.cxx.o.d -o CMakeFiles/lazylogger.dir/lazylogger.cxx.o -c /home/astrocent/workspace/packages/midas/progs/lazylogger.cxx
[ 26%] Linking CXX executable lazylogger
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[ 26%] Building CXX object progs/CMakeFiles/odbinit.dir/odbinit.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/odbinit.dir/odbinit.cxx.o -MF CMakeFiles/odbinit.dir/odbinit.cxx.o.d -o CMakeFiles/odbinit.dir/odbinit.cxx.o -c /home/astrocent/workspace/packages/midas/progs/odbinit.cxx
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[ 27%] Building CXX object progs/CMakeFiles/mchart.dir/mchart.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mchart.dir/mchart.cxx.o -MF CMakeFiles/mchart.dir/mchart.cxx.o.d -o CMakeFiles/mchart.dir/mchart.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mchart.cxx
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cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mjson_test.dir/mjson_test.cxx.o -MF CMakeFiles/mjson_test.dir/mjson_test.cxx.o.d -o CMakeFiles/mjson_test.dir/mjson_test.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mjson_test.cxx
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[ 30%] Building CXX object progs/CMakeFiles/get_record_test.dir/get_record_test.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/get_record_test.dir/get_record_test.cxx.o -MF CMakeFiles/get_record_test.dir/get_record_test.cxx.o.d -o CMakeFiles/get_record_test.dir/get_record_test.cxx.o -c /home/astrocent/workspace/packages/midas/progs/get_record_test.cxx
[ 30%] Linking CXX executable get_record_test
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/get_record_test.dir/get_record_test.cxx.o -o get_record_test ../libmidas.a /usr/lib/x86_64-linux-gnu/libz.so -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl
[ 31%] Building CXX object progs/CMakeFiles/odb_lock_test.dir/odb_lock_test.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/odb_lock_test.dir/odb_lock_test.cxx.o -MF CMakeFiles/odb_lock_test.dir/odb_lock_test.cxx.o.d -o CMakeFiles/odb_lock_test.dir/odb_lock_test.cxx.o -c /home/astrocent/workspace/packages/midas/progs/odb_lock_test.cxx
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[ 31%] Building CXX object progs/CMakeFiles/mfe_link_test.dir/mfe_link_test.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mfe_link_test.dir/mfe_link_test.cxx.o -MF CMakeFiles/mfe_link_test.dir/mfe_link_test.cxx.o.d -o CMakeFiles/mfe_link_test.dir/mfe_link_test.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mfe_link_test.cxx
[ 32%] Linking CXX executable mfe_link_test
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/mfe_link_test.dir/mfe_link_test.cxx.o -o mfe_link_test ../libmfe.a ../libmidas.a /usr/lib/x86_64-linux-gnu/libz.so -lcurl -L/usr/lib/x86_64-linux-gnu -lmysqlclient -lzstd -lssl -lcrypto -lresolv -lm -L/home/astrocent/anaconda3/lib -lpq -lutil -lrt -ldl
[ 32%] Building CXX object progs/CMakeFiles/mfe_link_test_cxx.dir/mfe_link_test_cxx.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/mfe_link_test_cxx.dir/mfe_link_test_cxx.cxx.o -MF CMakeFiles/mfe_link_test_cxx.dir/mfe_link_test_cxx.cxx.o.d -o CMakeFiles/mfe_link_test_cxx.dir/mfe_link_test_cxx.cxx.o -c /home/astrocent/workspace/packages/midas/progs/mfe_link_test_cxx.cxx
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[ 33%] Building CXX object progs/CMakeFiles/feudp.dir/feudp.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/feudp.dir/feudp.cxx.o -MF CMakeFiles/feudp.dir/feudp.cxx.o.d -o CMakeFiles/feudp.dir/feudp.cxx.o -c /home/astrocent/workspace/packages/midas/progs/feudp.cxx
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[ 35%] Building CXX object progs/CMakeFiles/msysmon.dir/msysmon.cxx.o
cd /home/astrocent/workspace/packages/midas/build/progs && /usr/bin/c++ -DHAVE_CURL -DHAVE_FTPLIB -DHAVE_MYSQL -DHAVE_PGSQL -D_LARGEFILE64_SOURCE -I/home/astrocent/workspace/packages/midas/include -I/home/astrocent/workspace/packages/midas/mxml -I/home/astrocent/workspace/packages/midas/mscb/include -I/home/astrocent/workspace/packages/midas/mjson -I/home/astrocent/workspace/packages/midas/mvodb -I/home/astrocent/workspace/packages/midas/midasio -O2 -g -DNDEBUG -Wall -Wformat=2 -Wno-format-nonliteral -Wno-strict-aliasing -Wuninitialized -Wno-unused-function -I/usr/include/mysql -I/home/astrocent/anaconda3/include -MD -MT progs/CMakeFiles/msysmon.dir/msysmon.cxx.o -MF CMakeFiles/msysmon.dir/msysmon.cxx.o.d -o CMakeFiles/msysmon.dir/msysmon.cxx.o -c /home/astrocent/workspace/packages/midas/progs/msysmon.cxx
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[ 36%] Building CXX object progs/CMakeFiles/msequencer.dir/msequencer.cxx.o
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19 Mar 2024 |
Konstantin Olchanski | Bug Report | Midas (manalyzer) + ROOT 6.31/01 - compilation error | ok, thank you for your information. I cannot reproduce this problem, I use vanilla Ubuntu
LTS 22, ROOT binary kit root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4 from root.cern.ch
and latest midas from git.
something is wrong with your ubuntu or with your c++ standard library or with your ROOT.
a) can you try with root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4 from root.cern.ch
b) for the midas build, please run "make cclean; make cmake -k" and email me (or post
here) the complete output.
K.O. |
|
2729
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19 Mar 2024 |
Konstantin Olchanski | Bug Report | Midas (manalyzer) + ROOT 6.31/01 - compilation error | > ok, thank you for your information. I cannot reproduce this problem, I use vanilla Ubuntu
> LTS 22, ROOT binary kit root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4 from root.cern.ch
> and latest midas from git.
>
> something is wrong with your ubuntu or with your c++ standard library or with your ROOT.
>
> a) can you try with root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4 from root.cern.ch
> b) for the midas build, please run "make cclean; make cmake -k" and email me (or post
> here) the complete output.
also, please email me the output of these commands on your machine:
daq00:midas$ ls -l /lib/x86_64-linux-gnu/libstdc++*
lrwxrwxrwx 1 root root 19 May 13 2023 /lib/x86_64-linux-gnu/libstdc++.so.6 -> libstdc++.so.6.0.30
-rw-r--r-- 1 root root 2260296 May 13 2023 /lib/x86_64-linux-gnu/libstdc++.so.6.0.30
daq00:midas$
and
daq00:midas$ ldd $ROOTSYS/bin/rootreadspeed
linux-vdso.so.1 (0x00007ffe6c399000)
libTree.so => /daq/cern_root/root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4/lib/libTree.so (0x00007f67e53b5000)
libRIO.so => /daq/cern_root/root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4/lib/libRIO.so (0x00007f67e4fb9000)
libCore.so => /daq/cern_root/root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4/lib/libCore.so (0x00007f67e4b08000)
libstdc++.so.6 => /lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f67e48bd000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f67e489b000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f67e4672000)
libNet.so => /daq/cern_root/root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4/lib/libNet.so (0x00007f67e458b000)
libThread.so => /daq/cern_root/root_v6.30.02.Linux-ubuntu22.04-x86_64-gcc11.4/lib/libThread.so (0x00007f67e4533000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f67e444c000)
/lib64/ld-linux-x86-64.so.2 (0x00007f67e5599000)
libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3 (0x00007f67e43d6000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f67e43b8000)
liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007f67e438d000)
libxxhash.so.0 => /lib/x86_64-linux-gnu/libxxhash.so.0 (0x00007f67e4378000)
liblz4.so.1 => /lib/x86_64-linux-gnu/liblz4.so.1 (0x00007f67e4358000)
libzstd.so.1 => /lib/x86_64-linux-gnu/libzstd.so.1 (0x00007f67e4289000)
libssl.so.3 => /lib/x86_64-linux-gnu/libssl.so.3 (0x00007f67e41e3000)
libcrypto.so.3 => /lib/x86_64-linux-gnu/libcrypto.so.3 (0x00007f67e3d9f000)
daq00:midas$
K.O. |
|
2730
|
28 Mar 2024 |
Grzegorz Nieradka | Bug Report | Midas (manalyzer) + ROOT 6.31/01 - compilation error |
I found solution for my trouble. With MIDAS and ROOT everything is OK,
the trobule was with my Ubuntu enviroment.
In this case the trobule was caused by earlier installed anaconda and hardcoded path
to anaconda libs folder in PATH enviroment variable.
In anaconda lib folder I have the libstdc++.so.6.0.29 and the hardcoded path
to this folder was added during the linking, by ld program, after the standard path location
of libstdc++.
So the linker tried to link to this version of libstdc++.
When I removed the path for anaconda libs from enviroment and the standard libs location
is /usr/lib/x86_64-linux-gnu/ and I have the libstdc++.so.6.0.32 version
of stdc++ library everything is compiling and linking smoothly without any errors.
Additionaly, everything works smoothly even with the newest ROOT version 6.30/04 compiled
from source.
Thanks for help.
BTW. I would like to take this opportunity to wish everyone a happy Easter and tasty eggs!
Regards,
Grzegorz Nieradka |
|
2734
|
02 Apr 2024 |
Konstantin Olchanski | Bug Report | Midas (manalyzer) + ROOT 6.31/01 - compilation error | > I found solution for my trouble. With MIDAS and ROOT everything is OK,
> the trobule was with my Ubuntu enviroment.
Congratulations with figuring this out.
BTW, this is the 2nd case of contaminated linker environment I run into in the last 30 days. We
just had a problem of "cannot link MIDAS with ROOT" (resolving by "make cmake NO_ROOT=1 NO_CURL=1
NO_MYSQL=1").
This all seems to be a flaw in cmake, it reports "found ROOT at XXX", "found CURL at YYY", "found
MYSQL at ZZZ", then proceeds to link ROOT, CURL and MYSQL libraries from somewhere else,
resulting in shared library version mismatch.
With normal Makefiles, this is fixable by changing the link command from:
g++ -o rmlogger ... -LAAA/lib -LXXX/lib -LYYY/lib -lcurl -lmysql -lROOT
into explicit
g++ -o rmlogger ... -LAAA/lib XXX/lib/libcurl.a YYY/lib/libmysql.a ...
defeating the bogus CURL and MYSQL libraries in AAA.
With cmake, I do not think it is possible to make this transformation.
Maybe it is possible to add a cmake rules to at least detect this situation, i.e. compare library
paths reported by "ldd rmlogger" to those found and expected by cmake.
K.O. |
|
2736
|
15 Apr 2024 |
Konstantin Olchanski | Bug Report | open MIDAS RPC ports | we had a bit of trouble with open network ports recently and I now think security of MIDAS RPC
ports needs to be tightened.
TL;DR, this is a non-trivial network configuration problem, TL required, DR up to you.
as background, right now we have two settings in ODB, "/expt/security/enable non-localhost
RPC" set to "no" (the default) and set to "yes". Set to "no" is very secure, all RPC sockets
listen only on the "localhost" interface (127.0.0.1) and do not accept connections from other
computers. Set to "yes", RPC sockets accept connections from everywhere in the world, but
immediately close them without reading any data unless connection origins are listed in ODB
"/expt/security/RPC hosts" (white-listed).
the problem, one. for security and robustness we place most equipments on a private network
(192.168.1.x). MIDAS frontends running on these equipments must connect to MIDAS running on
the main computer. This requires setting "enable non-localhost RPC" to "yes" and white-listing
all private network equipments. so far so good.
the problem, one, continued. in this configuration, the MIDAS main computer is usually also
the network gateway (with NAT, IP forwarding, DHCP, DNS, etc). so now MIDAS RPC ports are open
to all external connections (in the absence of restrictive firewall rules). one would hope for
security-through-obscurity and expect that "external threat actors" will try to bother them,
but in reality we eventually see large numbers of rejected unwanted connections logged in
midas.log (we log the first 10 rejected connections to help with maintaining the RPC
connections white-list).
the problem, two. central IT do not like open network ports. they run their scanners, discover
the MIDAS RPC ports, complain about them, require lengthy explanations, etc.
it would be much better if in the typical configuration, MIDAS RPC ports did not listen on
external interfaces (campus network). only listen on localhost and on private network
interfaces (192.168.1.x).
I am not yet of the simplest way to implement this. But I think this is the direction we
should go.
P.S. what about firewall rules? two problems: one: from statistic-of-one, I make mistakes
writing firewall rules, others also will make mistakes, a literally fool-proof protection of
MIDAS RPC ports is needed. two: RHEL-derived Linuxes by-default have restrictive firewall
rules, and this is good for security, except that there is a failure mode where at boot time
something can go wrong and firewall rules are not loaded at all. we have seen this happen.
this is a complete disaster on a system that depends on firewall rules for security. better to
have secure applications (TCP ports protected by design and by app internals) with firewall
rules providing a secondary layer of protection.
P.P.S. what about MIDAS frontend initial connection to the mserver? this is currently very
insecure, but the vulnerability window is very small. Ideally we should rework the mserver
connection to make it simpler, more secure and compatible with SSH tunneling.
P.P.S. Typical network diagram:
internet - campus firewall - campus network - MIDAS host (MIDAS) - 192.168.1.x network - power
supplies, digitizers, MIDAS frontends.
P.P.S. mserver connection sequence:
1) midas frontend opens 3 tcp sockets, connections permitted from anywhere
2) midas frontend opens tcp socket to main mserver, sends port numbers of the 3 tcp sockets
3) main mserver forks out a secondary (per-client) mserver
4) secondary mserver connects to the 3 tcp sockets of the midas frontend created in (1)
5) from here midas rpc works
6) midas frontend loads the RPC white-list
7) from here MIDAS RPC sockets are secure (protected by the white-list).
(the 3 sockets are: RPC recv_sock, RPC send_sock and event_sock)
P.P.S. MIDAS UDP sockets used for event buffer and odb notifications are secure, they bind to
localhost interface and do not accept external connections.
K.O. |
|
2737
|
15 Apr 2024 |
Stefan Ritt | Bug Report | open MIDAS RPC ports | One thing coming to my mind is the interface binding. If you have a midas host with two networks
("global" and "local"=192.168.x.x), you can tell to which interface a socket should bind.
By default it binds both interfaces, but we could restrict the socket only to bind to the local
interface 192.168.x.x. This way the open port would be invisible from the outside, but from
your local network everybody can connect easily without the need of a white list.
Stefan |
|
2742
|
30 Apr 2024 |
Luigi Vigani | Bug Report | Params not initialized when starting sequencer | Good afternoon,
After updating Midas to the latest develop commit
(0f5436d901a1dfaf6da2b94e2d87f870e3611cf1) we found out a bug when starting
sequencer. If we have a simple loop from start value to stop value and step
size, just printing the value at each iteration, we see everything good (see
first attachment). Then we included another script though, which contains
several subroutines we defined for our detector, and we try to run the same
script. Unfortunately after this the parameters seem uninitialized, and the
value at each loop does not make sense (see second attachment). Also, sometimes
when pressing run the set parameter window would pop-up, but sometimes not.
The script is this one:
>>>
COMMENT Test script to check for a specific bug
INCLUDE global_basic_functions
#CALL setup_paths
#CALL generate_DUT_params
PARAM lv_start, "Start of LV", 1.8
PARAM lv_stop, "Stop of LV", 2.1
PARAM lv_step, "Step of LV", 0.02
n_iterations = (($lv_stop - $lv_start)/$lv_step)
MSG "Parameters:"
MSG $lv_start
MSG $lv_stop
MSG $lv_step
MSG $n_iterations
MSG "Start of looping"
LOOP n, $n_iterations
lv_now = $lv_start + $n * $lv_step
MSG $lv_now
WAIT SECONDS, 1
ENDLOOP
<<<
and the only difference comes from commenting the line:
>>>
INCLUDE global_basic_functions
<<<
as global_basic_functions is defined as a LIBRARY and it includes 75 (!)
subroutines...
Is it possible that when loading a large script it messes up the loading of
parameters?
Thank you very much,
Regards,
Luigi. |
| Attachment 1: midas_sequencer_ok.png
|
|
| Attachment 2: midas_sequencer_buggy2.png
|
|
|
2750
|
03 May 2024 |
Zaher Salman | Bug Report | Params not initialized when starting sequencer | Could you please export and send me the /Sequencer ODB tree (or just /Sequencer/Param and /Sequencer/Variables) in both cases while the sequence is running.
thanks,
Zaher
> Good afternoon,
>
> After updating Midas to the latest develop commit
> (0f5436d901a1dfaf6da2b94e2d87f870e3611cf1) we found out a bug when starting
> sequencer. If we have a simple loop from start value to stop value and step
> size, just printing the value at each iteration, we see everything good (see
> first attachment). Then we included another script though, which contains
> several subroutines we defined for our detector, and we try to run the same
> script. Unfortunately after this the parameters seem uninitialized, and the
> value at each loop does not make sense (see second attachment). Also, sometimes
> when pressing run the set parameter window would pop-up, but sometimes not.
>
> The script is this one:
>
> >>>
> COMMENT Test script to check for a specific bug
>
> INCLUDE global_basic_functions
>
> #CALL setup_paths
> #CALL generate_DUT_params
>
> PARAM lv_start, "Start of LV", 1.8
> PARAM lv_stop, "Stop of LV", 2.1
> PARAM lv_step, "Step of LV", 0.02
>
> n_iterations = (($lv_stop - $lv_start)/$lv_step)
>
> MSG "Parameters:"
> MSG $lv_start
> MSG $lv_stop
> MSG $lv_step
> MSG $n_iterations
>
> MSG "Start of looping"
>
> LOOP n, $n_iterations
> lv_now = $lv_start + $n * $lv_step
> MSG $lv_now
> WAIT SECONDS, 1
> ENDLOOP
> <<<
>
> and the only difference comes from commenting the line:
>
> >>>
> INCLUDE global_basic_functions
> <<<
>
> as global_basic_functions is defined as a LIBRARY and it includes 75 (!)
> subroutines...
>
> Is it possible that when loading a large script it messes up the loading of
> parameters?
>
> Thank you very much,
> Regards,
> Luigi. |
|
2751
|
03 May 2024 |
Stefan Ritt | Bug Report | Params not initialized when starting sequencer | Ok, here is the complete code to reproduce the problem. Load parameter_test.msl which includes functions.msl. From the screenshot you see the variables containing
garbage, and you also see that from the ODB screenshot. For completeness, I added Sequencer.json which contains the whole sequencer tree.
The interesting thing is that this works sometimes, and sometimes not. I'm not sure if this in the GUI or in the sequencer program, so we have to sort out who can
fix it ;-)
Best,
Stefan |
| Attachment 1: param_test.msl
|
INCLUDE functions
PARAM lv_start, "Start of LV", 1.8
PARAM lv_stop, "Stop of LV", 2.1
PARAM lv_step, "Step of LV", 0.02
n_iterations = (($lv_stop - $lv_start)/$lv_step)
MSG "Parameters:"
MSG $lv_start
MSG $lv_stop
MSG $lv_step
MSG $n_iterations
MSG "Start of looping"
LOOP n, $n_iterations
lv_now = $lv_start + $n * $lv_step
MSG $lv_now
WAIT SECONDS, 1
ENDLOOP
|
| Attachment 2: functions.msl
|
SUBROUTINE sub1
WAIT seconds, 1
ENDSUBROUTINE
SUBROUTINE sub2
WAIT seconds, 1
ENDSUBROUTINE
SUBROUTINE sub3
WAIT seconds, 1
ENDSUBROUTINE
SUBROUTINE sub4
WAIT seconds, 1
ENDSUBROUTINE
SUBROUTINE sub5
WAIT seconds, 1
ENDSUBROUTINE
SUBROUTINE sub6
WAIT seconds, 1
ENDSUBROUTINE
|
| Attachment 3: Sequencer.json
|
{
"/MIDAS version": "2.1",
"/filename": "Sequencer.json",
"/ODB path": "/Sequencer",
"State": {
"New File/key": {
"type": 8,
"access_mode": 7,
"last_written": 1714720819
},
"New File": false,
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"type": 12,
"item_size": 256,
"access_mode": 7,
"last_written": 1714720819
},
"Path": "",
"Filename/key": {
"type": 12,
"item_size": 256,
"access_mode": 7,
"last_written": 1714720819
},
"Filename": "param_test.msl",
"SFilename/key": {
"type": 12,
"item_size": 256,
"access_mode": 7,
"last_written": 1714720819
},
"SFilename": "/Users/ritt/online/userfiles/sequencer/param_test.msl",
"Next Filename/key": {
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"num_values": 10,
"item_size": 256,
"access_mode": 7,
"last_written": 1714720819
},
"Next Filename": [
"",
"",
"",
"",
"",
"",
"",
"",
"",
""
],
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... 379 more lines ...
|
| Attachment 4: Screenshot_2024-05-03_at_09.19.29.png
|
|
| Attachment 5: Screenshot_2024-05-03_at_09.20.47.png
|
|
|
2752
|
03 May 2024 |
Luigi Vigani | Bug Report | Params not initialized when starting sequencer | It is pretty much the same as Stefan, I attach here the screenshots. Also in my case it works sometimes, and sometimes partially (one or 2 params, like in
attachment 3).
> Could you please export and send me the /Sequencer ODB tree (or just /Sequencer/Param and /Sequencer/Variables) in both cases while the sequence is running.
>
> thanks,
> Zaher
>
>
> > Good afternoon,
> >
> > After updating Midas to the latest develop commit
> > (0f5436d901a1dfaf6da2b94e2d87f870e3611cf1) we found out a bug when starting
> > sequencer. If we have a simple loop from start value to stop value and step
> > size, just printing the value at each iteration, we see everything good (see
> > first attachment). Then we included another script though, which contains
> > several subroutines we defined for our detector, and we try to run the same
> > script. Unfortunately after this the parameters seem uninitialized, and the
> > value at each loop does not make sense (see second attachment). Also, sometimes
> > when pressing run the set parameter window would pop-up, but sometimes not.
> >
> > The script is this one:
> >
> > >>>
> > COMMENT Test script to check for a specific bug
> >
> > INCLUDE global_basic_functions
> >
> > #CALL setup_paths
> > #CALL generate_DUT_params
> >
> > PARAM lv_start, "Start of LV", 1.8
> > PARAM lv_stop, "Stop of LV", 2.1
> > PARAM lv_step, "Step of LV", 0.02
> >
> > n_iterations = (($lv_stop - $lv_start)/$lv_step)
> >
> > MSG "Parameters:"
> > MSG $lv_start
> > MSG $lv_stop
> > MSG $lv_step
> > MSG $n_iterations
> >
> > MSG "Start of looping"
> >
> > LOOP n, $n_iterations
> > lv_now = $lv_start + $n * $lv_step
> > MSG $lv_now
> > WAIT SECONDS, 1
> > ENDLOOP
> > <<<
> >
> > and the only difference comes from commenting the line:
> >
> > >>>
> > INCLUDE global_basic_functions
> > <<<
> >
> > as global_basic_functions is defined as a LIBRARY and it includes 75 (!)
> > subroutines...
> >
> > Is it possible that when loading a large script it messes up the loading of
> > parameters?
> >
> > Thank you very much,
> > Regards,
> > Luigi. |
| Attachment 1: seq1.PNG
|
|
| Attachment 2: seq2.PNG
|
|
| Attachment 3: seq3.PNG
|
|
|
2755
|
03 May 2024 |
Zaher Salman | Bug Report | Params not initialized when starting sequencer | I have been able to reproduce the problem only once. From what I see, it seems that the Variables ODB tree is not initialized properly from the Param tree. Below are the messages from the failed run compared to a successful one. As far as I could see, the javascript code does not change anything in the Variables ODB tree (only monitors it). The actual changes are done by the sequencer program, or am I wrong?
Failed run:
16:14:25.849 2024/05/03 [Sequencer,INFO] + 3 *
16:14:24.722 2024/05/03 [Sequencer,INFO] + 2 *
16:14:23.594 2024/05/03 [Sequencer,INFO] + 1 *
16:14:23.592 2024/05/03 [Sequencer,INFO] Start of looping
16:14:23.591 2024/05/03 [Sequencer,INFO] (( - )/)
16:14:23.591 2024/05/03 [Sequencer,INFO]
16:14:23.590 2024/05/03 [Sequencer,INFO]
16:14:23.590 2024/05/03 [Sequencer,INFO]
16:14:23.589 2024/05/03 [Sequencer,INFO] Parameters:
16:14:23.562 2024/05/03 [Sequencer,TALK] Sequencer started with script "testpars.msl".
Successful run:
16:15:37.472 2024/05/03 [Sequencer,INFO] 1.820000
16:15:37.471 2024/05/03 [Sequencer,INFO] Start of looping
16:15:37.471 2024/05/03 [Sequencer,INFO] 15
16:15:37.470 2024/05/03 [Sequencer,INFO] 0.020000
16:15:37.470 2024/05/03 [Sequencer,INFO] 2.100000
16:15:37.469 2024/05/03 [Sequencer,INFO] 1.800000
16:15:37.469 2024/05/03 [Sequencer,INFO] Parameters:
16:15:37.450 2024/05/03 [Sequencer,TALK] Sequencer started with script "testpars.msl". |
|
2756
|
03 May 2024 |
Stefan Ritt | Bug Report | Params not initialized when starting sequencer | Ahh, that rings a bell:
1) JS opens start dialog box
2) User enters parameters and presses start
3) JS writes parameters
4) JS starts sequencer
5) Sequencer copies parameters to variables
Now how do you handle 3) and 4). Just issue two mjsonrpc commands together? What then could happen is that 4) is executed before 3) and we get the garbage.
You have to do 3) and WAIT for the return ("then" in the JS promise), and only then issue 4) from there.
Stefan |
|
2757
|
03 May 2024 |
Zaher Salman | Bug Report | Params not initialized when starting sequencer | Thanks for the hint Stefan. I pushed a possible fix but I cannot test it since I cannot reproduce the issue.
> Ahh, that rings a bell:
>
> 1) JS opens start dialog box
> 2) User enters parameters and presses start
> 3) JS writes parameters
> 4) JS starts sequencer
> 5) Sequencer copies parameters to variables
>
> Now how do you handle 3) and 4). Just issue two mjsonrpc commands together? What then could happen is that 4) is executed before 3) and we get the garbage.
> You have to do 3) and WAIT for the return ("then" in the JS promise), and only then issue 4) from there.
>
> Stefan |
|
2758
|
03 May 2024 |
Stefan Ritt | Bug Report | Params not initialized when starting sequencer | Seems to me like the problem happens less frequently, but I still see it (1 out of 5 or so). The fact that /Sequencer/Params/Value is empty tells me that the GUI
has the problem and not the sequencer side.
Stefan |
| Attachment 1: Screenshot_2024-05-03_at_18.19.52.png
|
|
|
2763
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10 May 2024 |
Zaher Salman | Bug Report | Params not initialized when starting sequencer | I think that I finally managed to fix the problem. The default values of the parameters are now written first in one go, then the sequencer waits for confirmation that everything is completed before proceeding. Please test and let me know if there are still any issues.
Zaher |
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Draft
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13 May 2024 |
Luigi Vigani | Bug Report | Params not initialized when starting sequencer | [quote="Zaher Salman"]I think that I finally managed to fix the problem. The default values of the parameters are now written first in one go, then the sequencer waits for confirmation that everything is completed before proceeding. Please test and let me know if there are still any issues. Zaher [/quote] |
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2765
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13 May 2024 |
Luigi Vigani | Bug Report | Params not initialized when starting sequencer |
| Zaher Salman wrote: | I think that I finally managed to fix the problem. The default values of the parameters are now written first in one go, then the sequencer waits for confirmation that everything is completed before proceeding. Please test and let me know if there are still any issues.
Zaher |
Hi Zaher,
It seems fixed to me as well! Thanks a lot!
Luigi. |
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2767
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16 May 2024 |
Konstantin Olchanski | Bug Report | midas alarm borked condition evaluation | I am updating the TRIUMF IRIS experiment to the latest version of MIDAS. I see following error messages in midas.log:
19:06:16.806 2024/05/16 [mhttpd,ERROR] [odb.cxx:6967:db_get_data_index,ERROR] index (29) exceeds array length (20) for key
"/Equipment/Beamline/Variables/Measured"
19:06:15.806 2024/05/16 [mhttpd,ERROR] [odb.cxx:6967:db_get_data_index,ERROR] index (30) exceeds array length (20) for key
"/Equipment/Beamline/Variables/Measured"
The errors are correct, there is only 20 elements in that array. The errors are coming every few seconds, they spam midas.log. How do I fix
them? Where do they come from? There is no additional diagnostics or information to go from.
In the worst case, they come from some custom web page that reads wrong index variables from ODB. mhttpd currently provides no diagnostics to
find out which web page could be causing this.
But maybe it's internal to MIDAS? I save odb to odb.json, "grep Measured odb.json" yields:
iris00:~> grep Measured odb.json
"Condition" : "/Equipment/Beamline/Variables/Measured[29] > 1e-5",
"Condition" : "/Equipment/Beamline/Variables/Measured[30] < 0.5",
So wrong index errors is coming from evaluated alarms.
ODB "/Alarms/Alarm system active" is set to "no" (alarm system is disabled), the errors are coming.
ODB "/Alarms/Alarms/TP4/Active" is set to "no" (specific alarm is disabled), the errors are coming.
WTF? (and this is recentish borkage, old IRIS MIDAS had the same wrong index alarms and did not generate these errors).
Breakage:
- where is the error message "evaluated alarm XXX cannot be computed because YYY cannot be read from ODB!"
- disabled alarm should not be computed
- alarm system is disabled, alarms should not be computed
K.O.
P.S. I am filing bug reports here, I cannot be bothered with the 25-factor authentication to access bitbucket. |
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2768
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17 May 2024 |
Stefan Ritt | Bug Report | midas alarm borked condition evaluation | This is a common problem I also encountered in the past. You get a low-level ODB access error (could also be a read of a non-existing key) and you
have no idea where this comes from. Could be the alarm system, a mhttpd web page, even some user code in a front-end over which the midas library
has no control.
One option would be to add a complete stack dump to each of these error (ROOT does something like that), but I hear already people shouting "my
midas.log is flooded with stack dumps!". So what I do in this case is I run a midas program in the debugger and set a breakpoint (in your case at
odb.cxx:6967). If the breakpoint triggers, I inspect the stack and find out where this comes from.
Not that I print a stack dump for such error in the odbxx API. This goes to stdout, not the midas log, and it helped me in the past. Unfortunately
stack dumps work only under linux (not MacOSX), and they do not contain all information a debugger can show you.
It is not true that alarm conditions are evaluated when the alarm system is off. I just tried and it works fine. The code is here:
alarm.cxx:591
/* check global alarm flag */
flag = TRUE;
size = sizeof(flag);
db_get_value(hDB, 0, "/Alarms/Alarm system active", &flag, &size, TID_BOOL, TRUE);
if (!flag)
return AL_SUCCESS;
so no idea why you see this error if you correctly st "Alarm system active" to false.
Stefan |
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