> when I try to stop a run from odbedit I get a core dump.
> 
> [ODBEdit1,INFO] Run #31 stopped odbedit: src/system.c:1223: ss_shm_flush:
> Assertion `size == mmap_size[handle]' failed. Aborted (core dumped)
> 
> midas commit 53af92a5d0...
> 
> -----
> 
> I checked what happens if I try to stop a run via the mhttpd web-page: this
> works! So what is different?
> 
> -----
> 
> I placed a issue (# 47) on bitbucket as well.
> 
> What is the preferred channel to report potential bugs (elog / bitbucket issues)? 

I think I found the problem. Some ODB String values which are **automatically**
generated:

CSS File = STRING : [1024] mhttpd.css
Sqlite dir = STRING : [1024]
History dir = STRING : [1024]
Sound = STRING : [1000] alarm.mp3

are exceeding the MAX_STRING_LENGTH 256 (defined in msystem.h)

It looks as if this screws up quite a bit of the system! When deleting .ODB.SHM and
afterwards try to reload the ODB via a dump I previously made with odbedit, the
following is happening:

1) I get the error message that some strings are too long (exceeding
MAX_STRING_LENGTH). Unfortunately the underlying routine doesn't tell which ODB
variables this is.

2) After this reload, essentially nothing is working anymore. Any client I tried to
start just crashed.

Since it seems that the string length of MAX_STRING_LENGTH is very crucial I would
suggest that db_create_record (or whatever routine is dealing with it) checks for
STRING variables and ensures that they cannot exceed MAX_STRING_LENGTH.

When I shortened in my dump the above variables to MAX_STRING_LENGTH, regenerated the
ODB, also the 'stop' Problem in odbedit is gone.

> > when I try to stop a run from odbedit I get a core dump.
> > 
> > [ODBEdit1,INFO] Run #31 stopped odbedit: src/system.c:1223: ss_shm_flush:
> > Assertion `size == mmap_size[handle]' failed. Aborted (core dumped)
> > 


I am quite puzzled by this situation. We have seen the above error before, tried to track it down, failed. I was 
always thinking this is some kind of strange size mismatch between odb size and shared memory size and 
shared memory save file odb.shm size.

Now with your information, it looks like it is memory corruption.

I always thought there is no length limit to odb strings, except for the odb api problem where you have to 
know the maximum string length for db_get_value() & co otherwise long strings will be corrupted. Today
nobody uses fixed size buffers, either db_get_value() allocates the string of correct size (replacing buffer
overflow errors with memory leak errors), or return std::string.

I shall check on the use of MAX_STRING_SIZE at least in odb itself...

The default value 256 seems to be too small for today's use. (if you want to store json data, web page 
fragments, etc).


K.O.




> > midas commit 53af92a5d0...
> > 
> > -----
> > 
> > I checked what happens if I try to stop a run via the mhttpd web-page: this
> > works! So what is different?
> > 
> > -----
> > 
> > I placed a issue (# 47) on bitbucket as well.
> > 
> > What is the preferred channel to report potential bugs (elog / bitbucket issues)? 
> 
> I think I found the problem. Some ODB String values which are **automatically**
> generated:
> 
> CSS File = STRING : [1024] mhttpd.css
> Sqlite dir = STRING : [1024]
> History dir = STRING : [1024]
> Sound = STRING : [1000] alarm.mp3
> 
> are exceeding the MAX_STRING_LENGTH 256 (defined in msystem.h)
> 
> It looks as if this screws up quite a bit of the system! When deleting .ODB.SHM and
> afterwards try to reload the ODB via a dump I previously made with odbedit, the
> following is happening:
> 
> 1) I get the error message that some strings are too long (exceeding
> MAX_STRING_LENGTH). Unfortunately the underlying routine doesn't tell which ODB
> variables this is.
> 
> 2) After this reload, essentially nothing is working anymore. Any client I tried to
> start just crashed.
> 
> Since it seems that the string length of MAX_STRING_LENGTH is very crucial I would
> suggest that db_create_record (or whatever routine is dealing with it) checks for
> STRING variables and ensures that they cannot exceed MAX_STRING_LENGTH.
> 
> When I shortened in my dump the above variables to MAX_STRING_LENGTH, regenerated the
> ODB, also the 'stop' Problem in odbedit is gone.

> when I try to stop a run from odbedit I get a core dump.
> [ODBEdit1,INFO] Run #31 stopped odbedit: src/system.c:1223: ss_shm_flush:
> Assertion `size == mmap_size[handle]' failed. Aborted (core dumped)
> 

I am puzzled. The crash is at the very end of everything (save odb shared memory to odb.shm),
does the run actually stop, or the crash is before the run is fully stopped? (I guess if you want
to run more odbedit commands after stopping the run, so you care about not crashing).

K.O.

> CSS File = STRING : [1024] mhttpd.css
> Sqlite dir = STRING : [1024]
> History dir = STRING : [1024]
> Sound = STRING : [1000] alarm.mp3

After a quick discussion with Konstantin, I changed these strings to a length of 256 chars 
(MAX_STRING_LENGTH). Actually all changes I had to made was on code introduced by KO, so I hope I 
did everything correctly. He should carefully check my changes (actually I would have preferred if he 
could change his code himself...).

I agree with KO that the preferred format for saving the ODB should be JSON, but there might be 
experiments with have some old ODB dumps in other formats, so we should not remove the possibility to 
read those formats back.

Stefan

When I run odbedit remotely (odbedit -h ladd09), the "cleanup" command unexpectedly produces the 
output of the "sor" command (sure enough, there is a call to db_get_open_records() there), but when I run 
it locally, I do not get this output (but db_get_open_records() is still called). Strange. K.O.

> When I run odbedit remotely (odbedit -h ladd09), the "cleanup" command unexpectedly produces the 
> output of the "sor" command (sure enough, there is a call to db_get_open_records() there), but when I run 
> it locally, I do not get this output (but db_get_open_records() is still called). Strange. K.O.

The db_get_open_records() call was by mistake there, I removed it. What remains is that the notification 
message if a client is removed from the ODB goes through the system messages. When running locally, odbedit 
echoes it's own messages, but when running remotely, this is not the case. So the messages can be seen by 
everybody else (plus it ends up in the message file), but not by the remote odbedit where the cleanup is 
started. The quick fix for that is to say "old" in odbedit which shows the last few lines of the message 
file, so one can see any successful cleanup. 

Dear MIDAS experts,

I gave a try to the MIDAS python interface and ran all tests available in midas/python/tests.
Two Int64 tests from test_odb.py had failed (see below), everthong else - succeeded

I'm using a ~ 2.5 weeks-old commit and python 3.9 on SL7 Linux platform.

commit c19b4e696400ee437d8790b7d3819051f66da62d (HEAD -> develop, origin/develop, origin/HEAD)
Author: Zaher Salman <zaher.salman@gmail.com>
Date:   Sun Jan 14 13:18:48 2024 +0100

The symptoms are consistent with a string --> int64 conversion not happening 
where it is needed. 

Perhaps the issue have already been fixed? 

-- many thanks, regards, Pasha
-------------------------------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 178, in testInt64
    self.set_and_readback_from_parent_dir("/pytest", "int64_2", [123, 40000000000000000], midas.TID_INT64, True)
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 130, in set_and_readback_from_parent_dir
    self.validate_readback(value, retval[key_name], expected_key_type)
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 87, in validate_readback
    self.assert_equal(val, retval[i], expected_key_type)
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 60, in assert_equal
    self.assertEqual(val1, val2)
AssertionError: 123 != '123'

with the test on line 178 commented out, the test on the next line fails in a similar way:
        
Traceback (most recent call last):
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 179, in testInt64
    self.set_and_readback_from_parent_dir("/pytest", "int64_2", 37, midas.TID_INT64, True)
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 130, in set_and_readback_from_parent_dir
    self.validate_readback(value, retval[key_name], expected_key_type)
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 102, in validate_readback
    self.assert_equal(value, retval, expected_key_type)
  File "/home/mu2etrk/test_stand/pasha_020/midas/python/tests/test_odb.py", line 60, in assert_equal
    self.assertEqual(val1, val2)
AssertionError: 37 != '37'
---------------------------------------------------------------------------

> The symptoms are consistent with a string --> int64 conversion not happening 
> where it is needed. 

Thanks for the report Pasha. Indeed I was missing a conversion in one place. Fixed now!

Ben

> > The symptoms are consistent with a string --> int64 conversion not happening 
> > where it is needed. 
> 
> Thanks for the report Pasha. Indeed I was missing a conversion in one place. Fixed now!
> 

Are we running these tests as part of the nightly build on bitbucket? They would be part of 
the "make test" target. Correct python dependancies may need to be added to the bitbucket OS 
image in bitbucket-pipelines.yml. (This is a PITA to get right).

K.O.

I am setting up a sqlite db to serve as a run database.

The easiest option is to use the history sqlite feature, and add run information 
as virtual history events

however:

Invalid tag 0 'Comment' in event 21 'Run Parameters': cannot do history for 
TID_STRING data, sorry!

I'd like to save e.g. the edit on start information , with shift crew checks. 
Would it be easy to allow for text, or is this inherent to the history system 
handling binary data?

> Invalid tag 0 'Comment' in event 21 'Run Parameters': cannot do history for 
> TID_STRING data, sorry!

The original MIDAS history API does not have provisions for storing TID_STRING data,
it is a very unfortunate limitation that has been with us for a very long time.

If I ever get around to rewrite the MIDAS history API, I will definitely add support for TID_STRING data.

But not today.

K.O.

P.S. Support for arbitrary binary blobs is also possible, but this will make the midas history
a kind of "a daq inside the daq" thing, probably we do not want to go this direction.

K.O.

I had to move strlcpy & strlcat into a separate file "strlcpy.c". A header file
"strlcpy.h" was added as well. This way one can omit the old HAVE_STRLCPY which
made life hard. The windows and linux makefiles were adjusted accordingly, but
for Max OS X there might be some fixes necessary which I could not test.

Hi all,
  I've started receiving the following error that I can't track down.  Does
anyone have a suggestion for where to start looking for the cause of this?

[Analyzer,ERROR] [odb.c:9460:db_open_record,ERROR] struct size mismatch for "/"
(expected size: 576, size in ODB: 0)

This error prevents me from running two runs in a row.  I have to close the DAQ
and restart to take multiple runs.  Also it prevents me from running the analyzer
in offline mode. 

I also noticed that several for the ODB directories no longer have the same html
format when viewed through the browser.  I've attached a screen print of the
"/Logger/Channels" page.

Thanks,
Robert

We have seen several times a problem with stuck data buffers. The symptoms are very confusing - 
frontends cannot start, instead hang forever in a state very hard to kill. Also "mdump -s -d -z 
BUF03" for the affected data buffers is stuck.

We have identified the source of this problem - the semaphore for the buffer is locked and nobody 
will ever unlock it - MIDAS relies on a feature of SYSV semaphores where they are automatically 
unlocked by the OS and cannot ever be stuck ever. (see man semop, SEM_UNDO function).

I think this SEM_UNDO function is broken in recent Linux kernels and sometimes the semaphore 
remains locked after the process that locked it has died. MIDAS is not programmed to deal with this 
situation and the stuck semaphore has to be cleared manually.

Here, "BUF3" is used as example, but we have seen "SYSTEM" and ODB with stuck semaphores, too.

Steps:
a) confirm that we are using SYSV semaphores: "ipcs" should show many semaphores
b) identify the stuck semaphore: "strace mdump -s -d -z BUF03".
c) here will be a large printout, but ultimately you will see repeated entries of 
"semtimedop(9633800, {{0, -1, SEM_UNDO}}, 1, {1, 0}^C <unfinished ...>"
d) erase the stuck semaphore "ipcrm -s 9633800", where the number comes from semtimedop() in 
the strace output.
e) try again: "mdump -s -d -z BUF03" should work now.

Ultimately, I think we should switch to POSIX semaphores - they are easier to manage (the strace 
and ipcrm dance becomes "rm /dev/shm/deap_BUF03.sem" - but they do not have the SEM_UNDO 
function, so detection of locked and stuck semaphores will have to be done by MIDAS. (Unless we 
can find some library of semaphore functions that already provides such advanced functionality).

K.O.

Hi,

I was wondering if there is a "mechanism" to run an executable
file after each subrun is closed...

I need to convert .mid.lz4 subrun files to ROOT (TTree) files;

Thanks,
Gennaro

There is no "mechanism" foreseen to be executed after each subrun. But you could 
run a shell script after each run which loops over all subruns and converts them 
one after the other.

Stefan

> Hi,
> 
> I was wondering if there is a "mechanism" to run an executable
> file after each subrun is closed...
> 
> I need to convert .mid.lz4 subrun files to ROOT (TTree) files;
> 
> Thanks,
> Gennaro

We use the lazylogger for something similar to this. You can specify the path to a custom script, and it will be run for each midas file that gets written:
https://midas.triumf.ca/MidasWiki/index.php/Lazylogger#Using_a_script
This means that you don't have to wait until the end of the run to start processing.

If the ROOT conversion is going to be slow, but you have a batch system available, you could use the lazylogger script to submit a job to the batch system for each file.

> 
> > Hi,
> > 
> > I was wondering if there is a "mechanism" to run an executable
> > file after each subrun is closed...
> > 
> > I need to convert .mid.lz4 subrun files to ROOT (TTree) files;
> > 
> > Thanks,
> > Gennaro

Please be aware of mlogger.c update rev 4566 on Sept 23rd 2009, when Stefan
fixed a buglet in the subrun file size computations. Before this fix, the first
subrun could be of a short length. If you use subruns, please update your
mlogger to at least rev 4566 (or newer, Stefan added the run and subrun time
limits just recently).
K.O.

> >
> > .../c++  ...  /opt/local/lib/libssl.dylib
> >
> 
> I get the same, libssl from /opt/local, so we are not using openssl shipped with mac os.
> 

I note that latest mongoose 6.16 finally has a virtual ssl layer and appears to support mbedtls (polarssl) in addition to openssl.

I now think I should see if it works - as it gives us a way to support https without relying on the user having
pre-installed working openssl packages - we consistently run into problems with openssl on macos, and even
on linux there was trouble with preinstalled openssl packages and libraries.

With mbedtls, one will have to "git pull" and "make" it, but historically this causes much less trouble.

Also, with luck, mbedtls has better support for certificate expiration (I would really love to have openssl report an error
or a warning or at least some hint if I feed it an expired certificate) and (gasp!) certbot integration.

K.O.

> ... support for certbot

The certbot tool to use instead of certbot is this: https://github.com/ndilieto/uacme

K.O.