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ID	Date	Author	Topic	Subject
1607	10 Jul 2019	Hassan	Bug Report	Header files missing when trying to compile rootana, roody and analyzer
Hi, we have now done a clean install of Root and after some dynamic linking we have been able to make Rootana and analyzer. However we get an error when we try to run analyzer. -------------------------------------------------------------------------------------------------------------------------------------------------- First of all heres the information requested: [hh19285@it038146 ~]$ which root-config /software/root/v6.06.08/bin/root-config [hh19285@it038146 ~]$ root-config --version 6.06/08 [hh19285@it038146 ~]$ root-config --features asimage astiff builtin_afterimage builtin_fftw3 builtin_ftgl builtin_freetype builtin_glew builtin_pcre builtin_lzma builtin_davix builtin_gsl builtin_cfitsio builtin_xrootd builtin_llvm cxx11 cling davix exceptions explicitlink fftw3 fitsio fortran gdml genvector http krb5 mathmore memstat minuit2 opengl pch python roofit shadowpw shared ssl table thread tmva unuran vc vdt xft xml x11 xrootd [hh19285@it038146 ~]$ root-config --cflags -pthread -std=c++11 -Wno-deprecated-declarations -m64 -I/software/root/v6.06.08/include ------------------------------------------------------------------------------------------------------------------------------------------------------ [hh19285@it038146 ~]$ cd ~/online/build/ [hh19285@it038146 build]$ ls analyzer CMakeCache.txt CMakeFiles cmake_install.cmake data.txt d.txt experimentaldata frontend ft232h.py f.txt iptable_state_2july19.txt Makefile midas.log [hh19285@it038146 build]$ make [ 71%] Built target analyzer [100%] Built target frontend [hh19285@it038146 build]$ ./analyzer Warning in <TClassTable::Add>: class TApplication already in TClassTable Warning in <TClassTable::Add>: class TApplicationImp already in TClassTable Warning in <TClassTable::Add>: class TAttFill already in TClassTable Warning in <TClassTable::Add>: class TAttLine already in TClassTable Warning in <TClassTable::Add>: class TAttMarker already in TClassTable Warning in <TClassTable::Add>: class TAttPad already in TClassTable Warning in <TClassTable::Add>: class TAttAxis already in TClassTable Warning in <TClassTable::Add>: class TAttText already in TClassTable Warning in <TClassTable::Add>: class TAtt3D already in TClassTable Warning in <TClassTable::Add>: class TAttBBox already in TClassTable Warning in <TClassTable::Add>: class TAttBBox2D already in TClassTable Warning in <TClassTable::Add>: class TBenchmark already in TClassTable Warning in <TClassTable::Add>: class TBrowser already in TClassTable Warning in <TClassTable::Add>: class TBrowserImp already in TClassTable Warning in <TClassTable::Add>: class TBuffer already in TClassTable Warning in <TClassTable::Add>: class TRootIOCtor already in TClassTable Warning in <TClassTable::Add>: class TCanvasImp already in TClassTable Warning in <TClassTable::Add>: class TColor already in TClassTable Warning in <TClassTable::Add>: class TColorGradient already in TClassTable Warning in <TClassTable::Add>: class TLinearGradient already in TClassTable Warning in <TClassTable::Add>: class TRadialGradient already in TClassTable Warning in <TClassTable::Add>: class TContextMenu already in TClassTable Warning in <TClassTable::Add>: class TContextMenuImp already in TClassTable Warning in <TClassTable::Add>: class TControlBarImp already in TClassTable Warning in <TClassTable::Add>: class TInspectorImp already in TClassTable Warning in <TClassTable::Add>: class TDatime already in TClassTable Warning in <TClassTable::Add>: class TDirectory already in TClassTable Warning in <TClassTable::Add>: class TEnv already in TClassTable Warning in <TClassTable::Add>: class TEnvRec already in TClassTable Warning in <TClassTable::Add>: class TFileHandler already in TClassTable Warning in <TClassTable::Add>: class TGuiFactory already in TClassTable Warning in <TClassTable::Add>: class TStyle already in TClassTable Warning in <TClassTable::Add>: class TVirtualX already in TClassTable Warning in <TClassTable::Add>: class TVirtualPad already in TClassTable Warning in <TClassTable::Add>: class TVirtualViewer3D already in TClassTable Warning in <TClassTable::Add>: class TBuffer3D already in TClassTable Warning in <TClassTable::Add>: class TGLManager already in TClassTable Warning in <TClassTable::Add>: class TVirtualGLPainter already in TClassTable Warning in <TClassTable::Add>: class TVirtualGLManip already in TClassTable Warning in <TClassTable::Add>: class TVirtualPS already in TClassTable Warning in <TClassTable::Add>: class TGLPaintDevice already in TClassTable Warning in <TClassTable::Add>: class TVirtualPadPainter already in TClassTable Warning in <TClassTable::Add>: class TVirtualPadEditor already in TClassTable Warning in <TClassTable::Add>: class TVirtualFFT already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<char,string> already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const char,string> already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<string,vector<string> > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const string,vector<string> > already in TClassTable Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<string,vector<string> > > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<TString,vector<TString> > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const TString,vector<TString> > already in TClassTable Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<TString,vector<TString> > > already in TClassTable Warning in <TClassTable::Add>: class FileStat_t already in TClassTable Warning in <TClassTable::Add>: class UserGroup_t already in TClassTable Warning in <TClassTable::Add>: class SysInfo_t already in TClassTable Warning in <TClassTable::Add>: class CpuInfo_t already in TClassTable Warning in <TClassTable::Add>: class MemInfo_t already in TClassTable Warning in <TClassTable::Add>: class ProcInfo_t already in TClassTable Warning in <TClassTable::Add>: class RedirectHandle_t already in TClassTable Warning in <TClassTable::Add>: class TExec already in TClassTable Warning in <TClassTable::Add>: class TFolder already in TClassTable Warning in <TClassTable::Add>: class TMacro already in TClassTable Warning in <TClassTable::Add>: class TMD5 already in TClassTable Warning in <TClassTable::Add>: class TMemberInspector already in TClassTable Warning in <TClassTable::Add>: class TMessageHandler already in TClassTable Warning in <TClassTable::Add>: class TNamed already in TClassTable Warning in <TClassTable::Add>: class TObjString already in TClassTable Warning in <TClassTable::Add>: class TObject already in TClassTable Warning in <TClassTable::Add>: class TRemoteObject already in TClassTable Warning in <TClassTable::Add>: class TPoint already in TClassTable Warning in <TClassTable::Add>: class TProcessID already in TClassTable Warning in <TClassTable::Add>: class TProcessUUID already in TClassTable Warning in <TClassTable::Add>: class TProcessEventTimer already in TClassTable Warning in <TClassTable::Add>: class TRef already in TClassTable Warning in <TClassTable::Add>: class TROOT already in TClassTable Warning in <TClassTable::Add>: class TRegexp already in TClassTable Warning in <TClassTable::Add>: class TPRegexp already in TClassTable Warning in <TClassTable::Add>: class TPMERegexp already in TClassTable Warning in <TClassTable::Add>: class TRefCnt already in TClassTable Warning in <TClassTable::Add>: class TSignalHandler already in TClassTable Warning in <TClassTable::Add>: class TStdExceptionHandler already in TClassTable Warning in <TClassTable::Add>: class TStopwatch already in TClassTable Warning in <TClassTable::Add>: class TStorage already in TClassTable Warning in <TClassTable::Add>: class TString already in TClassTable Warning in <TClassTable::Add>: class TStringLong already in TClassTable Warning in <TClassTable::Add>: class TStringToken already in TClassTable Warning in <TClassTable::Add>: class TSubString already in TClassTable Warning in <TClassTable::Add>: class TSysEvtHandler already in TClassTable Warning in <TClassTable::Add>: class TSystem already in TClassTable Warning in <TClassTable::Add>: class TSystemFile already in TClassTable Warning in <TClassTable::Add>: class TSystemDirectory already in TClassTable Warning in <TClassTable::Add>: class TTask already in TClassTable Warning in <TClassTable::Add>: class TTime already in TClassTable Warning in <TClassTable::Add>: class TTimer already in TClassTable Warning in <TClassTable::Add>: class TQObject already in TClassTable Warning in <TClassTable::Add>: class TQObjSender already in TClassTable Warning in <TClassTable::Add>: class TQClass already in TClassTable Warning in <TClassTable::Add>: class TQConnection already in TClassTable Warning in <TClassTable::Add>: class TQCommand already in TClassTable Warning in <TClassTable::Add>: class TQUndoManager already in TClassTable Warning in <TClassTable::Add>: class TUUID already in TClassTable Warning in <TClassTable::Add>: class TPluginHandler already in TClassTable Warning in <TClassTable::Add>: class TPluginManager already in TClassTable Warning in <TClassTable::Add>: class Event_t already in TClassTable Warning in <TClassTable::Add>: class SetWindowAttributes_t already in TClassTable Warning in <TClassTable::Add>: class WindowAttributes_t already in TClassTable Warning in <TClassTable::Add>: class GCValues_t already in TClassTable Warning in <TClassTable::Add>: class ColorStruct_t already in TClassTable Warning in <TClassTable::Add>: class PictureAttributes_t already in TClassTable Warning in <TClassTable::Add>: class Segment_t already in TClassTable Warning in <TClassTable::Add>: class Point_t already in TClassTable Warning in <TClassTable::Add>: class Rectangle_t already in TClassTable Warning in <TClassTable::Add>: class timespec already in TClassTable Warning in <TClassTable::Add>: class TTimeStamp already in TClassTable Warning in <TClassTable::Add>: class TFileInfo already in TClassTable Warning in <TClassTable::Add>: class TFileInfoMeta already in TClassTable Warning in <TClassTable::Add>: class TFileCollection already in TClassTable Warning in <TClassTable::Add>: class TVirtualAuth already in TClassTable Warning in <TClassTable::Add>: class TVirtualMutex already in TClassTable Warning in <TClassTable::Add>: class TLockGuard already in TClassTable Warning in <TClassTable::Add>: class TRedirectOutputGuard already in TClassTable Warning in <TClassTable::Add>: class TVirtualPerfStats already in TClassTable Warning in <TClassTable::Add>: class TVirtualMonitoringWriter already in TClassTable Warning in <TClassTable::Add>: class TVirtualMonitoringReader already in TClassTable Warning in <TClassTable::Add>: class TObjectSpy already in TClassTable Warning in <TClassTable::Add>: class TObjectRefSpy already in TClassTable Warning in <TClassTable::Add>: class TUri already in TClassTable Warning in <TClassTable::Add>: class TUrl already in TClassTable Warning in <TClassTable::Add>: class TInetAddress already in TClassTable Warning in <TClassTable::Add>: class TVirtualTableInterface already in TClassTable Warning in <TClassTable::Add>: class TBase64 already in TClassTable Warning in <TClassTable::Add>: class TParameter<bool> already in TClassTable Warning in <TClassTable::Add>: class TParameter<float> already in TClassTable Warning in <TClassTable::Add>: class TParameter<double> already in TClassTable Warning in <TClassTable::Add>: class TParameter<int> already in TClassTable Warning in <TClassTable::Add>: class TParameter<long> already in TClassTable Warning in <TClassTable::Add>: class TParameter<Long64_t> already in TClassTable Warning in <TClassTable::Add>: class TArray already in TClassTable Warning in <TClassTable::Add>: class TArrayC already in TClassTable Warning in <TClassTable::Add>: class TArrayD already in TClassTable Warning in <TClassTable::Add>: class TArrayF already in TClassTable Warning in <TClassTable::Add>: class TArrayI already in TClassTable Warning in <TClassTable::Add>: class TArrayL already in TClassTable Warning in <TClassTable::Add>: class TArrayL64 already in TClassTable Warning in <TClassTable::Add>: class TArrayS already in TClassTable Warning in <TClassTable::Add>: class TBits already in TClassTable Warning in <TClassTable::Add>: class TCollection already in TClassTable Warning in <TClassTable::Add>: class TBtree already in TClassTable Warning in <TClassTable::Add>: class TBtreeIter already in TClassTable Warning in <TClassTable::Add>: class TClassTable already in TClassTable Warning in <TClassTable::Add>: class TClonesArray already in TClassTable Warning in <TClassTable::Add>: class THashTable already in TClassTable Warning in <TClassTable::Add>: class THashTableIter already in TClassTable Warning in <TClassTable::Add>: class TIter already in TClassTable Warning in <TClassTable::Add>: class TIterator already in TClassTable Warning in <TClassTable::Add>: class TList already in TClassTable Warning in <TClassTable::Add>: class TListIter already in TClassTable Warning in <TClassTable::Add>: class THashList already in TClassTable Warning in <TClassTable::Add>: class TMap already in TClassTable Warning in <TClassTable::Add>: class TMapIter already in TClassTable Warning in <TClassTable::Add>: class TPair already in TClassTable Warning in <TClassTable::Add>: class TObjArray already in TClassTable Warning in <TClassTable::Add>: class TObjArrayIter already in TClassTable Warning in <TClassTable::Add>: class TObjectTable already in TClassTable Warning in <TClassTable::Add>: class TOrdCollection already in TClassTable Warning in <TClassTable::Add>: class TOrdCollectionIter already in TClassTable Warning in <TClassTable::Add>: class TSeqCollection already in TClassTable Warning in <TClassTable::Add>: class TSortedList already in TClassTable Warning in <TClassTable::Add>: class TExMap already in TClassTable Warning in <TClassTable::Add>: class TExMapIter already in TClassTable Warning in <TClassTable::Add>: class TRefArray already in TClassTable Warning in <TClassTable::Add>: class TRefArrayIter already in TClassTable Warning in <TClassTable::Add>: class TRefTable already in TClassTable Warning in <TClassTable::Add>: class TVirtualCollectionProxy already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<int,vector<int> > already in TClassTable Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const int,vector<int> > already in TClassTable Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<int,vector<int> > > already in TClassTable Warning in <TClassTable::Add>: class TBits::TReference already in TClassTable Warning in <TClassTable::Add>: class TBaseClass already in TClassTable Warning in <TClassTable::Add>: class TClass already in TClassTable Warning in <TClassTable::Add>: class TClassStreamer already in TClassTable Warning in <TClassTable::Add>: class TMemberStreamer already in TClassTable Warning in <TClassTable::Add>: class TDictAttributeMap already in TClassTable Warning in <TClassTable::Add>: class TClassRef already in TClassTable Warning in <TClassTable::Add>: class TClassGenerator already in TClassTable Warning in <TClassTable::Add>: class TDataMember already in TClassTable Warning in <TClassTable::Add>: class TOptionListItem already in TClassTable Warning in <TClassTable::Add>: class TDataType already in TClassTable Warning in <TClassTable::Add>: class TDictionary already in TClassTable Warning in <TClassTable::Add>: class TEnumConstant already in TClassTable Warning in <TClassTable::Add>: class TEnum already in TClassTable Warning in <TClassTable::Add>: class TFunction already in TClassTable Warning in <TClassTable::Add>: class TFunctionTemplate already in TClassTable Warning in <TClassTable::Add>: class ROOT::TSchemaRule already in TClassTable Warning in <TClassTable::Add>: class ROOT::TSchemaRule::TSources already in TClassTable Warning in <TClassTable::Add>: class ROOT::Detail::TSchemaRuleSet already in TClassTable Warning in <TClassTable::Add>: class TGlobal already in TClassTable Warning in <TClassTable::Add>: class TMethod already in TClassTable Warning in <TClassTable::Add>: class TMethodArg already in TClassTable Warning in <TClassTable::Add>: class TMethodCall already in TClassTable Warning in <TClassTable::Add>: class TInterpreter already in TClassTable Warning in <TClassTable::Add>: class TClassMenuItem already in TClassTable Warning in <TClassTable::Add>: class TVirtualIsAProxy already in TClassTable Warning in <TClassTable::Add>: class TVirtualStreamerInfo already in TClassTable Warning in <TClassTable::Add>: class TIsAProxy already in TClassTable Warning in <TClassTable::Add>: class TProtoClass already in TClassTable Warning in <TClassTable::Add>: class TProtoClass::TProtoRealData already in TClassTable Warning in <TClassTable::Add>: class TRealData already in TClassTable Warning in <TClassTable::Add>: class TStreamerArtificial already in TClassTable Warning in <TClassTable::Add>: class TStreamerBase already in TClassTable Warning in <TClassTable::Add>: class TStreamerBasicPointer already in TClassTable Warning in <TClassTable::Add>: class TStreamerLoop already in TClassTable Warning in <TClassTable::Add>: class TStreamerBasicType already in TClassTable Warning in <TClassTable::Add>: class TStreamerObject already in TClassTable Warning in <TClassTable::Add>: class TStreamerObjectAny already in TClassTable Warning in <TClassTable::Add>: class TStreamerObjectPointer already in TClassTable Warning in <TClassTable::Add>: class TStreamerObjectAnyPointer already in TClassTable Warning in <TClassTable::Add>: class TStreamerString already in TClassTable Warning in <TClassTable::Add>: class TStreamerSTL already in TClassTable Warning in <TClassTable::Add>: class TStreamerSTLstring already in TClassTable Warning in <TClassTable::Add>: class TStreamerElement already in TClassTable Warning in <TClassTable::Add>: class TToggle already in TClassTable Warning in <TClassTable::Add>: class TToggleGroup already in TClassTable Warning in <TClassTable::Add>: class TFileMergeInfo already in TClassTable Warning in <TClassTable::Add>: class TListOfFunctions already in TClassTable Warning in <TClassTable::Add>: class TListOfFunctionsIter already in TClassTable Warning in <TClassTable::Add>: class TListOfFunctionTemplates already in TClassTable Warning in <TClassTable::Add>: class TListOfDataMembers already in TClassTable Warning in <TClassTable::Add>: class TListOfEnums already in TClassTable Warning in <TClassTable::Add>: class TListOfEnumsWithLock already in TClassTable Warning in <TClassTable::Add>: class TListOfEnumsWithLockIter already in TClassTable Warning in <TClassTable::Add>: class TUnixSystem already in TClassTable Warning in <TClassTable::Add>: class TThread already in TClassTable Warning in <TClassTable::Add>: class TConditionImp already in TClassTable Warning in <TClassTable::Add>: class TCondition already in TClassTable Warning in <TClassTable::Add>: class TMutex already in TClassTable Warning in <TClassTable::Add>: class TMutexImp already in TClassTable Warning in <TClassTable::Add>: class TPosixCondition already in TClassTable Warning in <TClassTable::Add>: class TPosixMutex already in TClassTable Warning in <TClassTable::Add>: class TPosixThread already in TClassTable Warning in <TClassTable::Add>: class TPosixThreadFactory already in TClassTable Warning in <TClassTable::Add>: class TSemaphore already in TClassTable Warning in <TClassTable::Add>: class TThreadFactory already in TClassTable Warning in <TClassTable::Add>: class TThreadImp already in TClassTable Warning in <TClassTable::Add>: class TRWLock already in TClassTable Warning in <TClassTable::Add>: class TAtomicCount already in TClassTable Warning in <TClassTable::Add>: class TBufferFile already in TClassTable Warning in <TClassTable::Add>: class TDirectoryFile already in TClassTable Warning in <TClassTable::Add>: class TFile already in TClassTable Warning in <TClassTable::Add>: class TFileCacheRead already in TClassTable Warning in <TClassTable::Add>: class TFileCacheWrite already in TClassTable Warning in <TClassTable::Add>: class TFileMerger already in TClassTable Warning in <TClassTable::Add>: class TFree already in TClassTable Warning in <TClassTable::Add>: class TKey already in TClassTable Warning in <TClassTable::Add>: class TKeyMapFile already in TClassTable Warning in <TClassTable::Add>: class TMapFile already in TClassTable Warning in <TClassTable::Add>: class TMapRec already in TClassTable Warning in <TClassTable::Add>: class TMemFile already in TClassTable Warning in <TClassTable::Add>: class TArchiveFile already in TClassTable Warning in <TClassTable::Add>: class TArchiveMember already in TClassTable Warning in <TClassTable::Add>: class TZIPFile already in TClassTable Warning in <TClassTable::Add>: class TZIPMember already in TClassTable Warning in <TClassTable::Add>: class TLockFile already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfo already in TClassTable Warning in <TClassTable::Add>: class TCollectionProxyFactory already in TClassTable Warning in <TClassTable::Add>: class TEmulatedCollectionProxy already in TClassTable Warning in <TClassTable::Add>: class TEmulatedMapProxy already in TClassTable Warning in <TClassTable::Add>: class TGenCollectionProxy already in TClassTable Warning in <TClassTable::Add>: class TGenCollectionProxy::Value already in TClassTable Warning in <TClassTable::Add>: class TGenCollectionProxy::Method already in TClassTable Warning in <TClassTable::Add>: class TCollectionStreamer already in TClassTable Warning in <TClassTable::Add>: class TCollectionClassStreamer already in TClassTable Warning in <TClassTable::Add>: class TCollectionMemberStreamer already in TClassTable Warning in <TClassTable::Add>: class TVirtualObject already in TClassTable Warning in <TClassTable::Add>: class TVirtualArray already in TClassTable Warning in <TClassTable::Add>: class TFPBlock already in TClassTable Warning in <TClassTable::Add>: class TFilePrefetch already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfoActions::TConfiguredAction already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfoActions::TActionSequence already in TClassTable Warning in <TClassTable::Add>: class TStreamerInfoActions::TConfiguration already in TClassTable Break * segmentation violation =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007f7e8c322bbc in waitpid () from /lib64/libc.so.6 #1 0x00007f7e8c2a0ea2 in do_system () from /lib64/libc.so.6 #2 0x00007f7e911b21a4 in TUnixSystem::StackTrace() () from /usr/lib64/root/libCore.so.6.16 #3 0x00007f7e911b3fec in TUnixSystem::DispatchSignals(ESignals) () from /usr/lib64/root/libCore.so.6.16 #4 <signal handler called> #5 0x00007f7e8c3cca81 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f7e853e0c27 in TCling::TCling(char const, char const) () from /software/root/v6.06.08/lib/libCling.so #7 0x00007f7e853e179e in CreateInterpreter () from /software/root/v6.06.08/lib/libCling.so #8 0x00007f7e90feb1fc in TROOT::InitInterpreter() () from /usr/lib64/root/libCore.so.6.16 #9 0x00007f7e90feb806 in ROOT::Internal::GetROOT2() () from /usr/lib64/root/libCore.so.6.16 #10 0x00007f7e9107b32d in TApplication::TApplication(char const, int, char*, void, int) () from /usr/lib64/root/libCore.so.6.16 #11 0x00007f7e8e71bdf4 in TRint::TRint(char const, int, char*, void, int, bool) () from /usr/lib64/root/libRint.so.6.16 #12 0x000000000040d362 in main (argc=1, argv=0x7fff4d1d53b8) at /home/hh19285/packages/midas1/src/mana.cxx:5349 =========================================================== The lines below might hint at the cause of the crash. You may get help by asking at the ROOT forum http://root.cern.ch/forum Only if you are really convinced it is a bug in ROOT then please submit a report at http://root.cern.ch/bugs Please post the ENTIRE stack trace from above as an attachment in addition to anything else that might help us fixing this issue. =========================================================== #5 0x00007f7e8c3cca81 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f7e853e0c27 in TCling::TCling(char const, char const) () from /software/root/v6.06.08/lib/libCling.so #7 0x00007f7e853e179e in CreateInterpreter () from /software/root/v6.06.08/lib/libCling.so #8 0x00007f7e90feb1fc in TROOT::InitInterpreter() () from /usr/lib64/root/libCore.so.6.16 #9 0x00007f7e90feb806 in ROOT::Internal::GetROOT2() () from /usr/lib64/root/libCore.so.6.16 #10 0x00007f7e9107b32d in TApplication::TApplication(char const, int, char*, void, int) () from /usr/lib64/root/libCore.so.6.16 #11 0x00007f7e8e71bdf4 in TRint::TRint(char const, int, char*, void, int, bool) () from /usr/lib64/root/libRint.so.6.16 #12 0x000000000040d362 in main (argc=1, argv=0x7fff4d1d53b8) at /home/hh19285/packages/midas1/src/mana.cxx:5349 =========================================================== > > /home/hh19285/packages/rootana/include/TRootanaEventLoop.hxx:24:25: fatal error: > > THttpServer.h: No such file or directory > > #include "THttpServer.h" > > > > include/TPeakFindPanel.h:46:23: fatal error: TSpectrum.h: No such file or directory > > #include "TSpectrum.h" > > > > Your ROOT is strange, missing some standard features. Also installed in a strange place, /usr/include/root. > > Did you install ROOT from the EPEL RPM packages? In the last I have seen this ROOT built very strangely, with some standard features disabled for no obvious > reason. > > For this reason, I recommend that you install ROOT from the binary distribution at root.cern.ch or build it from source. > > For more debugging, please post the output of: > which root-config > root-config --version > root-config --features > root-config --cflags > > For reference, here is my output for a typical CentOS7 machine: > daq16:~$ which root-config > /daq/daqshare/olchansk/root/root_v6.12.04_el74_64/bin/root-config > daq16:~$ root-config --version > 6.12/04 > daq16:~$ root-config --features > asimage astiff builtin_afterimage builtin_ftgl builtin_gl2ps builtin_glew builtin_llvm builtin_lz4 builtin_unuran cling cxx11 exceptions explicitlink fftw3 gdmlgenvector > http imt mathmore minuit2 opengl pch pgsql python roofit shared sqlite ssl thread tmva x11 xft xml > daq16:~$ root-config --cflags -pthread -std=c++11 -m64 -I/daq/daqshare/olchansk/root/root_v6.12.04_el74_64/include > > The important one is the --features, see that "http" and "xml" are enabled. "spectrum" used to be an optional feature, I do not think it can be disabled these > days, so your missing "TSpectrum.h" is strange. (But I just think the EPEL ROOT RPMs are built wrong). > > K.O.
1606	09 Jul 2019	Stefan Ritt	Info	Limitations of MSL
> Yes, this has been the way to do it for years... Calling odbedit -c ... ist certainly not the most effective way, but it works. I just tried on my Mac and found that I can call odbedit about 150 times per second. So not so bad if you have a limited operations to perform. Stefan
1605	08 Jul 2019	Vinzenz Bildstein	Bug Report	Frontend killed at stop of run
> > > > > > For SIGKILL, my gdb reports "Program terminated with signal SIGKILL, Killed." and there is no stack > > > trace. Is this what you see? > > > > Yes, that is exactly what I remember seeing. > > > > Where would a SIGKILL come from?!? > > Look in the syslog (/var/log/messages). If the program was killed by the linux kernel, it would be logged there, > the usual cause is the machine runs out of memory and programs are killed by the OOM killer, this is logged > into the syslog, always. > > MIDAS also can issue a SIGKILL sometimes, again this is always logged in midas.log. see src/midas.c, search for SIGKILL to see > the exact messages printed before it is sent out. > > K.O. I haven't been able to reproduce the error from the overnight run so far. I will try and leave this running in gdb overnight to see if I can get that error again.
1604	08 Jul 2019	Konstantin Olchanski	Bug Report	Frontend killed at stop of run
> > > > For SIGKILL, my gdb reports "Program terminated with signal SIGKILL, Killed." and there is no stack > > trace. Is this what you see? > > Yes, that is exactly what I remember seeing. > Where would a SIGKILL come from?!? Look in the syslog (/var/log/messages). If the program was killed by the linux kernel, it would be logged there, the usual cause is the machine runs out of memory and programs are killed by the OOM killer, this is logged into the syslog, always. MIDAS also can issue a SIGKILL sometimes, again this is always logged in midas.log. see src/midas.c, search for SIGKILL to see the exact messages printed before it is sent out. K.O.
1603	08 Jul 2019	Vinzenz Bildstein	Bug Report	Frontend killed at stop of run
> > > run the frontend inside gdb and post the stack trace after the crash? > > > > > > if there is no crash (the program is stopped by exit()), you may need > > > to set a breakpoint in exit() or _exit() (not sure what it's latest name is) > > > then with luck your stack trace will show who/what called it from where. > > > > > > > If I remember correctly from the last time I tried that, it doesn't use the exit > > function but gdb just reports that the program was terminated and no longer exists. I > > can't set a breakpoint on SIGKILL as the point of SIGKILL is to kill the program and > > gdb can't set a break at that point afaik. > > For SIGKILL, my gdb reports "Program terminated with signal SIGKILL, Killed." and there is no stack > trace. Is this what you see? Yes, that is exactly what I remember seeing. > > If your program stops "normally", not from receiving some signal, set breakpoints on "exit" and > "_exit". > > The normal stop sequence is to call exit(), which runs all the atexit() functions (the midas atexit() > function prints the message about "cm_disconnect_experiment not called at end of program") and > calls _exit() to stop the program. > > So if you see the midas message "cm_disconnect_experiment not called at end of program", it is a > good indication that somebody (not mfe.c) called exit() on you. A breakpoint on "exit" should catch > who does it. > > Good luck, > K.O. So far I haven't seen the issue with the message "cm_disconnect_experiment not called at end of program" again. Now I just have to restart the frontend after the run has (failed?) to stop. After restarting the frontend everything seems to work again. I haven't been writing data while doing these tests, so I can't say if there is any data missing or if the runs were actually stopped properly (with a second dump of the ODB at the end).
1602	08 Jul 2019	Konstantin Olchanski	Bug Report	Frontend killed at stop of run
> > run the frontend inside gdb and post the stack trace after the crash? > > > > if there is no crash (the program is stopped by exit()), you may need > > to set a breakpoint in exit() or _exit() (not sure what it's latest name is) > > then with luck your stack trace will show who/what called it from where. > > > > If I remember correctly from the last time I tried that, it doesn't use the exit > function but gdb just reports that the program was terminated and no longer exists. I > can't set a breakpoint on SIGKILL as the point of SIGKILL is to kill the program and > gdb can't set a break at that point afaik. For SIGKILL, my gdb reports "Program terminated with signal SIGKILL, Killed." and there is no stack trace. Is this what you see? If your program stops "normally", not from receiving some signal, set breakpoints on "exit" and "_exit". The normal stop sequence is to call exit(), which runs all the atexit() functions (the midas atexit() function prints the message about "cm_disconnect_experiment not called at end of program") and calls _exit() to stop the program. So if you see the midas message "cm_disconnect_experiment not called at end of program", it is a good indication that somebody (not mfe.c) called exit() on you. A breakpoint on "exit" should catch who does it. Good luck, K.O.
1601	08 Jul 2019	Vinzenz Bildstein	Bug Report	Frontend killed at stop of run
> run the frontend inside gdb and post the stack trace after the crash? > > if there is no crash (the program is stopped by exit()), you may need > to set a breakpoint in exit() or _exit() (not sure what it's latest name is) > then with luck your stack trace will show who/what called it from where. > If I remember correctly from the last time I tried that, it doesn't use the exit function but gdb just reports that the program was terminated and no longer exists. I can't set a breakpoint on SIGKILL as the point of SIGKILL is to kill the program and gdb can't set a break at that point afaik.
1600	08 Jul 2019	Konstantin Olchanski	Info	Limitations of MSL
Hi, Stefan, on second thought, I agree, I do not know of any scripting language implementation (packaged as a library or not) that can store it's state in a file ("checkpoint the execution") and that can execute it's program "one line at a time", like the midas sequencer does now. In the most severe case, one invocation of msequencer executes one line of the msl script. K.O. > Sure some existing scripting languages can be used, but they fall short of a few important items in larger experiments: > > - they are typically run from a local terminal in the counting house. A remote observer of the experiment has no idea which script is running and at which state it is. > > - if DAQ crashes during a script or is aborted, it has to be restarted from the beginning. If you run a sequence of let's say 100 runs taking 8 hours, and on run #98 something goes wrong, you are screwed if you have to start at run #1 again. > > This are the main reasons why I developed the midas sequencer. Having everything web-based, everybody can watch remotely how far the sequence progressed. If the whole DAQ crashes, the sequence resumes from the crash point, not from the beginning. This is by saving the current state into the ODB. So even if the sequencer itself is stopped and restarted, that still works. > > I agree that the MSL is missing a few calculations, and I was just waiting to get a few specific requests. I will either add new functions such as basic calculations like adding and subtracting variables, or I will create a way to call an external shell like bash to do calculations. I put this high on my todo list. > > Stefan
1599	08 Jul 2019	Konstantin Olchanski	Info	Limitations of MSL
> Konstantin, would you mind resurrecting and sharing the python code? Not until September or later. I encourage you to start an "issue" in the bitbucket repository (a "request for improvement") and contact Thomas L. to see if we can/should discuss it at the incoming midas workshop at TRIUMF. > So far, my workaround is to call odbedit, which is not ideal for many reasons. Yes, this has been the way to do it for years... Also I was thinking of writing an command line tool to invoke midas json-rpc methods (via mhttpd), then you can do from command line or from a script everything that a web page can do. (of course you can do it today, by using "curl" to send http requests to mhttpd directly). K.O.
1598	08 Jul 2019	Konstantin Olchanski	Bug Report	Frontend killed at stop of run
> After a long overnight run to check that the frontend runs smoothly for a longer > time, I stopped the run and the frontend was killed by midas. run the frontend inside gdb and post the stack trace after the crash? if there is no crash (the program is stopped by exit()), you may need to set a breakpoint in exit() or _exit() (not sure what it's latest name is) then with luck your stack trace will show who/what called it from where. if it is hard to start the frontend inside gdb, you can start it normally, and attach gdb later, using a "gdb frontend.exe pid" command. K.O. > I am not sure why > this happened, as the end_of_run function returned successfully (at least the > print statement right before "return SUCCESS;" appeared right away). So > something else must have timed-out and caused it to be killed, I guess? > > Any suggestions on where to look to find out what causes this? > > Thanks in advance for your help!
1597	08 Jul 2019	Vinzenz Bildstein	Bug Report	Frontend killed at stop of run
I wrote a c++ frontend to read data from CAEN VX1730 digitizers which is used in parallel with the GRIFFIN frontend to read out DESCANT. After a long overnight run to check that the frontend runs smoothly for a longer time, I stopped the run and the frontend was killed by midas. I am not sure why this happened, as the end_of_run function returned successfully (at least the print statement right before "return SUCCESS;" appeared right away). So something else must have timed-out and caused it to be killed, I guess? Any suggestions on where to look to find out what causes this? Thanks in advance for your help!
1595	08 Jul 2019	Lukas Gerritzen	Info	Limitations of MSL
Thank you two! Actually, both solutions would allow me to fix my problem and I can see use cases for both. Having everything web-based is useful in bigger setups. However, in a testbeam environment, a python script is probably the more straight-forward solution. This gives access to the whole system of ones DAQ PC for whatever tricks one would like to perform. Konstantin, would you mind resurrecting and sharing the python code? So far, my workaround is to call odbedit, which is not ideal for many reasons. Cheers Lukas
1594	08 Jul 2019	Stefan Ritt	Info	Limitations of MSL
Sure some existing scripting languages can be used, but they fall short of a few important items in larger experiments: - they are typically run from a local terminal in the counting house. A remote observer of the experiment has no idea which script is running and at which state it is. - if DAQ crashes during a script or is aborted, it has to be restarted from the beginning. If you run a sequence of let's say 100 runs taking 8 hours, and on run #98 something goes wrong, you are screwed if you have to start at run #1 again. This are the main reasons why I developed the midas sequencer. Having everything web-based, everybody can watch remotely how far the sequence progressed. If the whole DAQ crashes, the sequence resumes from the crash point, not from the beginning. This is by saving the current state into the ODB. So even if the sequencer itself is stopped and restarted, that still works. I agree that the MSL is missing a few calculations, and I was just waiting to get a few specific requests. I will either add new functions such as basic calculations like adding and subtracting variables, or I will create a way to call an external shell like bash to do calculations. I put this high on my todo list. Stefan
1593	05 Jul 2019	Konstantin Olchanski	Info	Limitations of MSL
> I am missing a few features. MSL did not start out as a fully featured programming language. Rather than extending it until it becomes one, I think a better approach would be to take one of the existing extensible scripting language libraries and extend it with midas functions. For example, LUA (https://www.lua.org/about.html) seems to be popular. There were also requests for a midas extension for PYTHON (actually this has been done before, but never added to the midas repository. I still have that code and I suppose it could be resurrected). K.O. > Do any of the following exist and I have just > overlooked them? > > - Arithmetics: > SET foo, 2 > SET bar, 2 > SET FOOBAR, $foo + $bar > -> FOOBAR is 2, not 4 > > - Vectors/arrays > As far as I understand, "SET" only allows for single variables and no > "scripting" in variable names, i. e. doing something like the following > scripted: > SET var_1, 0 > SET var_2, 0 > ... > LOOP n, 10 > ... > IF something > SET var_${n}, 1 > ENDIF > > The only way I could think of doing something similar is via the ODB. > I don't know if it's good practice to fill the ODB with variables like this. > > - Loading scripts at run time (see other bug) > That would allow for script manipulation, even though it's kind of dirty, it > might be useful in some cases. > > - Obtaining results from external scripts > A way to pass things from external scripts would be the solution to all > problems. Something that is not implemented could be done in a bash or > python script instead. > > Cheers > Lukas
1592	05 Jul 2019	Konstantin Olchanski	Bug Report	Header files missing when trying to compile rootana, roody and analyzer
> /home/hh19285/packages/rootana/include/TRootanaEventLoop.hxx:24:25: fatal error: > THttpServer.h: No such file or directory > #include "THttpServer.h" > > include/TPeakFindPanel.h:46:23: fatal error: TSpectrum.h: No such file or directory > #include "TSpectrum.h" > Your ROOT is strange, missing some standard features. Also installed in a strange place, /usr/include/root. Did you install ROOT from the EPEL RPM packages? In the last I have seen this ROOT built very strangely, with some standard features disabled for no obvious reason. For this reason, I recommend that you install ROOT from the binary distribution at root.cern.ch or build it from source. For more debugging, please post the output of: which root-config root-config --version root-config --features root-config --cflags For reference, here is my output for a typical CentOS7 machine: daq16:~$ which root-config /daq/daqshare/olchansk/root/root_v6.12.04_el74_64/bin/root-config daq16:~$ root-config --version 6.12/04 daq16:~$ root-config --features asimage astiff builtin_afterimage builtin_ftgl builtin_gl2ps builtin_glew builtin_llvm builtin_lz4 builtin_unuran cling cxx11 exceptions explicitlink fftw3 gdmlgenvector http imt mathmore minuit2 opengl pch pgsql python roofit shared sqlite ssl thread tmva x11 xft xml daq16:~$ root-config --cflags -pthread -std=c++11 -m64 -I/daq/daqshare/olchansk/root/root_v6.12.04_el74_64/include The important one is the --features, see that "http" and "xml" are enabled. "spectrum" used to be an optional feature, I do not think it can be disabled these days, so your missing "TSpectrum.h" is strange. (But I just think the EPEL ROOT RPMs are built wrong). K.O.
1591	05 Jul 2019	Hassan	Bug Report	Header files missing when trying to compile rootana, roody and analyzer
First of all thank you for all the assistance provided so far, especially making changes to the code in CMakeList file previously for our configuration.I am not sure whether this is an appropriate Elog for this matter but we are getting the following error when trying to make rootana, roody and analyzer on our 64 bit DAQ machine. At the bottom of this Elog entry I have provided information about the specifics of our DAQ machine Below are the 2 errors we are encountering: ============================================================================= [hh19285@it038146 ~]$ cd packages/rootana/ [hh19285@it038146 rootana]$ ls bitbucket-pipelines.yml Dockerfile Doxygen.cxx include libAnalyzer libMidasInterface libNetDirectory libXmlServer Makefile.old obj README.md thisrootana.sh doc Doxyfile examples lib libAnalyzerDisplay libMidasServer libUnpack Makefile manalyzer old_analyzer thisrootana.csh [hh19285@it038146 rootana]$ cd examples/ [hh19285@it038146 examples]$ make g++ -o TV792Histogram.o -g -O2 -Wall -Wuninitialized -DHAVE_LIBZ -I/home/hh19285/packages/rootana/include -DHAVE_ROOT -pthread -std=c++11 -m64 -I/usr/include/root -DHAVE_ROOT_XML -DHAVE_ROOT_HTTP -DHAVE_THTTP_SERVER -DHAVE_MIDAS -DOS_LINUX -Dextname -I/home/hh19285/packages/midas/include -c TV792Histogram.cxx In file included from /home/hh19285/packages/rootana/include/TRootanaDisplay.hxx:5:0, from /home/hh19285/packages/rootana/include/TCanvasHandleBase.hxx:13, from /home/hh19285/packages/rootana/include/THistogramArrayBase.h:9, from TV792Histogram.h:5, from TV792Histogram.cxx:1: /home/hh19285/packages/rootana/include/TRootanaEventLoop.hxx:24:25: fatal error: THttpServer.h: No such file or directory #include "THttpServer.h" ^ compilation terminated. make: * [TV792Histogram.o] Error 1 [hh19285@it038146 examples]$ =============================================================================== [hh19285@it038146 analyzer]$ ls ana.cxx midas2root.cxx TAgilentHistogram.h TCamacADCHistogram.h TL2249Histogram.h TV1190Histogram.h TV1720Waveform.h TV1730RawWaveform.h anaDisplay.cxx README.txt TAnaManager.cxx TDT724Waveform.cxx TTRB3Histogram.cxx TV1720Correlations.cxx TV1730DppWaveform.cxx TV792Histogram.cxx Makefile root_server.cxx TAnaManager.hxx TDT724Waveform.h TTRB3Histogram.hxx TV1720Correlations.h TV1730DppWaveform.h TV792Histogram.h Makefile.old TAgilentHistogram.cxx TCamacADCHistogram.cxx TL2249Histogram.cxx TV1190Histogram.cxx TV1720Waveform.cxx TV1730RawWaveform.cxx [hh19285@it038146 analyzer]$ make g++ -o TV792Histogram.o -g -O2 -Wall -Wuninitialized -DHAVE_LIBZ -I../include -DHAVE_ROOT -pthread -std=c++11 -m64 -I/usr/include/root -DHAVE_ROOT_XML -DHAVE_ROOT_HTTP -DHAVE_THTTP_SERVER -DHAVE_MIDAS -DOS_LINUX -Dextname -I/home/hh19285/packages/midas/include -c TV792Histogram.cxx In file included from TV792Histogram.cxx:1:0: TV792Histogram.h:5:33: fatal error: THistogramArrayBase.h: No such file or directory #include "THistogramArrayBase.h" ^ compilation terminated. make: * [TV792Histogram.o] Error 1 =============================================================================== [hh19285@it038146 ~]$ cd $HOME/packages [hh19285@it038146 packages]$ git clone https://bitbucket.org/tmidas/roody Cloning into 'roody'... remote: Counting objects: 1115, done. remote: Compressing objects: 100% (470/470), done. remote: Total 1115 (delta 662), reused 1063 (delta 631) Receiving objects: 100% (1115/1115), 1.01 MiB \| 2.12 MiB/s, done. Resolving deltas: 100% (662/662), done. [hh19285@it038146 packages]$ cd roody [hh19285@it038146 roody]$ make g++ -O2 -g -Wall -Wuninitialized -fPIC -pthread -std=c++11 -m64 -I/usr/include/root -DNEED_STRLCPY -I. -Iinclude -DHAVE_NETDIRECTORY -I/home/hh19285/packages/rootana/include -c -MM src/.cxx > Makefile.depends1 In file included from src/Roody.cxx:42:0: include/TPeakFindPanel.h:46:23: fatal error: TSpectrum.h: No such file or directory #include "TSpectrum.h" ^ compilation terminated. In file included from src/TPeakFindPanel.cxx:12:0: include/TPeakFindPanel.h:46:23: fatal error: TSpectrum.h: No such file or directory #include "TSpectrum.h" ^ compilation terminated. make: [depend] Error 1 (ignored) sed 's#^#obj/#' Makefile.depends1 > Makefile.depends2 sed 's#^obj/ # #' Makefile.depends2 > Makefile.depends rm -f Makefile.depends1 Makefile.depends2 mkdir -p bin mkdir -p obj mkdir -p lib cd doxfiles; doxygen roodydox.cfg Warning: Tag `USE_WINDOWS_ENCODING' at line 11 of file roodydox.cfg has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Warning: Tag `DETAILS_AT_TOP' at line 23 of file roodydox.cfg has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Warning: Tag `SHOW_DIRECTORIES' at line 58 of file roodydox.cfg has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Warning: Tag `HTML_ALIGN_MEMBERS' at line 122 of file roodydox.cfg has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Warning: Tag `MAX_DOT_GRAPH_WIDTH' at line 220 of file roodydox.cfg has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Warning: Tag `MAX_DOT_GRAPH_HEIGHT' at line 221 of file roodydox.cfg has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for files to exclude Searching for files to process... Searching for files in directory /home/hh19285/packages/roody/doxfiles Reading and parsing tag files Parsing files Preprocessing /home/hh19285/packages/roody/doxfiles/features.dox... Parsing file /home/hh19285/packages/roody/doxfiles/features.dox... Preprocessing /home/hh19285/packages/roody/doxfiles/quickstart.dox... Parsing file /home/hh19285/packages/roody/doxfiles/quickstart.dox... Preprocessing /home/hh19285/packages/roody/doxfiles/roody.dox... Parsing file /home/hh19285/packages/roody/doxfiles/roody.dox... Preprocessing /home/hh19285/packages/roody/include/MTGListTree.h... Parsing file /home/hh19285/packages/roody/include/MTGListTree.h... Preprocessing /home/hh19285/packages/roody/include/Roody.h... Parsing file /home/hh19285/packages/roody/include/Roody.h... Preprocessing /home/hh19285/packages/roody/include/RoodyXML.h... Parsing file /home/hh19285/packages/roody/include/RoodyXML.h... Preprocessing /home/hh19285/packages/roody/include/TGTextDialog.h... Parsing file /home/hh19285/packages/roody/include/TGTextDialog.h... Preprocessing /home/hh19285/packages/roody/include/TPeakFindPanel.h... Parsing file /home/hh19285/packages/roody/include/TPeakFindPanel.h... Preprocessing /home/hh19285/packages/roody/src/MTGListTree.cxx... Parsing file /home/hh19285/packages/roody/src/MTGListTree.cxx... Preprocessing /home/hh19285/packages/roody/src/Roody.cxx... Parsing file /home/hh19285/packages/roody/src/Roody.cxx... Preprocessing /home/hh19285/packages/roody/src/RoodyXML.cxx... Parsing file /home/hh19285/packages/roody/src/RoodyXML.cxx... Preprocessing /home/hh19285/packages/roody/src/TGTextDialog.cxx... Parsing file /home/hh19285/packages/roody/src/TGTextDialog.cxx... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Creating members for template instances... Computing class relations... Add enum values to enums... Searching for member function documentation... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Parsing code for file features.dox... Generating code for file MTGListTree.cxx... Generating code for file MTGListTree.h... Parsing code for file quickstart.dox... Generating code for file Roody.cxx... Parsing code for file roody.dox... Generating code for file Roody.h... Generating code for file RoodyXML.cxx... Generating code for file RoodyXML.h... Generating code for file TGTextDialog.cxx... Generating code for file TGTextDialog.h... Generating code for file TPeakFindPanel.h... Generating file documentation... Generating docs for file features.dox... Generating docs for file MTGListTree.cxx... Generating docs for file MTGListTree.h... Generating docs for file quickstart.dox... Generating docs for file Roody.cxx... Generating docs for file roody.dox... Generating docs for file Roody.h... Generating docs for file RoodyXML.cxx... Generating docs for file RoodyXML.h... Generating docs for file TGTextDialog.cxx... Generating docs for file TGTextDialog.h... Generating docs for file TPeakFindPanel.h... Generating page documentation... Generating docs for page features... Generating docs for page quickstart... Generating group documentation... Generating class documentation... Generating docs for compound MemDebug... Generating docs for compound MTGListTree... Generating docs for compound OptStatMenu... Generating docs for compound PadObject... Generating docs for compound PadObjectVec... Generating docs for compound Roody... Generating docs for compound RoodyXML... Generating docs for compound TGTextDialog... Generating docs for compound TPeakFindPanel... Generating namespace index... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... lookup cache used 433/65536 hits=3757 misses=436 finished... g++ -O2 -g -Wall -Wuninitialized -fPIC -pthread -std=c++11 -m64 -I/usr/include/root -DNEED_STRLCPY -I. -Iinclude -DHAVE_NETDIRECTORY -I/home/hh19285/packages/rootana/include -c -o obj/main.o src/main.cxx g++ -O2 -g -Wall -Wuninitialized -fPIC -pthread -std=c++11 -m64 -I/usr/include/root -DNEED_STRLCPY -I. -Iinclude -DHAVE_NETDIRECTORY -I/home/hh19285/packages/rootana/include -c -o obj/DataSourceTDirectory.o src/DataSourceTDirectory.cxx g++ -O2 -g -Wall -Wuninitialized -fPIC -pthread -std=c++11 -m64 -I/usr/include/root -DNEED_STRLCPY -I. -Iinclude -DHAVE_NETDIRECTORY -I/home/hh19285/packages/rootana/include -c -o obj/Roody.o src/Roody.cxx In file included from src/Roody.cxx:42:0: include/TPeakFindPanel.h:46:23: fatal error: TSpectrum.h: No such file or directory #include "TSpectrum.h" ^ compilation terminated. make: ** [obj/Roody.o] Error 1 ================================================================================ For your reference here is the info about our DAQ machine [hh19285@it038146 bin]$ uname -a Linux it038146.users.bris.ac.uk 3.10.0-957.21.2.el7.x86_64 #1 SMP Wed Jun 5 14:26:44 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux [hh19285@it038146 bin]$ uname -a Linux it038146.users.bris.ac.uk 3.10.0-957.21.2.el7.x86_64 #1 SMP Wed Jun 5 14:26:44 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux [hh19285@it038146 bin]$ gcc -v Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC) [hh19285@it038146 bin]$ lsb_release -a LSB Version: :core-4.1-amd64:core-4.1-noarch Distributor ID: CentOS Description: CentOS Linux release 7.6.1810 (Core) Release: 7.6.1810 Codename: Core
1589	04 Jul 2019	Lukas Gerritzen	Info	Limitations of MSL
Hi, I am missing a few features. Do any of the following exist and I have just overlooked them? - Arithmetics: SET foo, 2 SET bar, 2 SET FOOBAR, $foo + $bar -> FOOBAR is 2, not 4 - Vectors/arrays As far as I understand, "SET" only allows for single variables and no "scripting" in variable names, i. e. doing something like the following scripted: SET var_1, 0 SET var_2, 0 ... LOOP n, 10 ... IF something SET var_${n}, 1 ENDIF The only way I could think of doing something similar is via the ODB. I don't know if it's good practice to fill the ODB with variables like this. - Loading scripts at run time (see other bug) That would allow for script manipulation, even though it's kind of dirty, it might be useful in some cases. - Obtaining results from external scripts A way to pass things from external scripts would be the solution to all problems. Something that is not implemented could be done in a bash or python script instead. Cheers Lukas
1588	03 Jul 2019	Thomas Lindner	Forum	MIDAS Workshop on Aug 7
Dear MIDAS users, Here's further information on the third MIDAS workshop: 1) Workshop will take place from 1PM-5PM (Vancouver time) on Aug 7. 2) A mostly finalized agenda for the workshop is posted here: https://indico.triumf.ca/conferenceDisplay.py?confId=2438 People are still welcome to email me if they want to present something. We should be able to add it to the schedule. 3) For those who want to participate remotely, we will be using bluejeans. The webpage for the bluejeans meeting is here: https://bluejeans.com/462865444 4) For those at TRIUMF I will confirm the meeting room closer to the date. Thomas > Dear MIDAS users, > > We would like to announce a third MIDAS workshop at TRIUMF on Aug 7, 2019. > Stefan Ritt will again be visiting TRIUMF at this time. > > The overall goal of the workshop is to present new features in MIDAS, to discuss > future changes and to hear experiences from different experiments. > > We expect that some participants will connect remotely to the workshop; we will > setup a video-conferencing option. The exact time of the workshop will be > decided later and will be optimized based on the geographic distribution of > remote attendees. So please let us know if you want to attend remotely. We are > also happy for people to come in person to TRIUMF. > > A (very) preliminary agenda includes > > - New default mhttpd pages and new APIs for custom pages > - Conversion of MIDAS to C++ > - new C++ based frontend framework (tmfe and mvodb from ALPHA-g) > - MySQL/Postgres database for storing ODB configurations > - Plans for updating history plotting > - Using MIDAS with an online trigger farm > - new C++ multithreaded flow analyzer (manalyzer from ALPHA-g) > > But please suggest other topics; we also hope to hear reports from particular > experiments. > > Sincerely, > Thomas (on behalf of MIDAS developers)
1587	03 Jul 2019	Lukas Gerritzen	Bug Report	mhttpd crashes when including nonexistent script in msequencer
Hi, the subject line describes the project already Suppose you have a file foo.msl. Somewhere in the file, you have the line INCLUDE bar.msl Once you click save in the sequencer page, mhttpd crashes: $ mhttpd free(): double free detected in tcache 2 [1] 27590 abort (core dumped) mhttpd GDB helps shed some light on the problem: #0 0x00007ffff76b057f in raise () from /lib64/libc.so.6 #1 0x00007ffff769a895 in abort () from /lib64/libc.so.6 #2 0x00007ffff76f39d7 in __libc_message () from /lib64/libc.so.6 #3 0x00007ffff76fa2ec in malloc_printerr () from /lib64/libc.so.6 #4 0x00007ffff76fbdf5 in _int_free () from /lib64/libc.so.6 #5 0x00000000004b8b41 in mxml_parse_entity (buf=buf@entry=0x7fffffffc2c8, file_name=file_name@entry=0x7fffffffc710 "/home/luk/packages/mutrig_daq/online/foo.xml", error=error@entry=0x7fffffffcd24 "XML read error in file \"/home/luk/packages/mutrig_daq/online/foo.xml\", line 2: bar.msl.xml is missing", error_size=error_size@entry=256, error_line=error_line@entry=0x7fffffffce24) at ../mxml/mxml.c:1996 #6 0x00000000004b966d in mxml_parse_file (file_name=file_name@entry=0x7fffffffc710 "/home/luk/packages/mutrig_daq/online/foo.xml", error=error@entry=0x7fffffffcd24 "XML read error in file \"/home/luk/packages/mutrig_daq/online/foo.xml\", line 2: bar.msl.xml is missing", error_size=error_size@entry=256, error_line=error_line@entry=0x7fffffffce24) at ../mxml/mxml.c:2041 #7 0x000000000041d9c2 in init_sequencer () at src/mhttpd.cxx:14321 #8 0x000000000040c2b6 in main (argc=<optimized out>, argv=<optimized out>) at src/mhttpd.cxx:18028 Cheers Lukas P. S. This problem reminds me of the old joke: A man goes to his doctor and says "Doc, it hurts when I do this" to which the doctor replies "Then don't do that". However, I think, mhttpd should not crash even if you're not supposed to include non-existent scripts in msequencer.
1586	03 Jul 2019	Lukas Gerritzen	Suggestion	my_global.h not present in my linux distribution (needed)
Thanks!

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