> > There is a bug in the string handling when changing ODB string entries via the
> > mhttpd (git sha 07dfb83). It truncates the string length in the ODB.
> > 
> > For instance I create a string with length 32 and set it with odbedit to 'a'.
> > Then the string length stays 32, as expected. If the same is done through the
> > web-interface, the string length will be truncated to 2.
> > 
> > This can lead to problems if some frontend has a hotlink to a structure
> > containing this string since it will complain about structure size mismatch. 
> 
> I know about this problem since last summer. I mentioned it to KO, since it's deep down in his 
> JSONRPC code. We had a long discussion, where he kind of insisted that this is not a bug but a 
> feature. The ODB should store strings with variable lengths, and thus adapt it according to the 
> current string length. This makes some sense, since in the future we plan to put C++ string 
> support for the ODB, where strings have dynamically varying lengths. But this will take a while, so 
> I asked KO to change the truncation of the strings though the web interface, because this breaks 
> many experiments. He did not react so far. Several people complained. Maybe your request will 
> help now.
> 
> Stefan

Well I appreciate the direction towards more C++ string handling, yet it must not break the hotlink
functionality which is very important at many places.

> There is a bug in the string handling when changing ODB string entries via the
> mhttpd (git sha 07dfb83). It truncates the string length in the ODB.
> 
> For instance I create a string with length 32 and set it with odbedit to 'a'.
> Then the string length stays 32, as expected. If the same is done through the
> web-interface, the string length will be truncated to 2.
> 
> This can lead to problems if some frontend has a hotlink to a structure
> containing this string since it will complain about structure size mismatch. 

I know about this problem since last summer. I mentioned it to KO, since it's deep down in his 
JSONRPC code. We had a long discussion, where he kind of insisted that this is not a bug but a 
feature. The ODB should store strings with variable lengths, and thus adapt it according to the 
current string length. This makes some sense, since in the future we plan to put C++ string 
support for the ODB, where strings have dynamically varying lengths. But this will take a while, so 
I asked KO to change the truncation of the strings though the web interface, because this breaks 
many experiments. He did not react so far. Several people complained. Maybe your request will 
help now.

Stefan

There is a bug in the string handling when changing ODB string entries via the
mhttpd (git sha 07dfb83). It truncates the string length in the ODB.

For instance I create a string with length 32 and set it with odbedit to 'a'.
Then the string length stays 32, as expected. If the same is done through the
web-interface, the string length will be truncated to 2.

This can lead to problems if some frontend has a hotlink to a structure
containing this string since it will complain about structure size mismatch. 

Pierre Gorel identified a problem with the 'start program' button on the new version of MIDAS that uses the 
mjsonrpc functions for building the webpages.  In particular, he tracked the problem down to some 
questionable std::string / char* handling.  

Interestingly, the particular 'start program' problem was seen on Pierre's Ubuntu 16.04.3 LTS machine, but 
could not be reproduced on RHEL-7 or Macos 10.13 machines.  So the manifestation of the code error 
seemed to depend on the compiler.

The problem should now be fixed in the HEAD version of MIDAS.  If you are using the newer MIDAS (since last 
summer), particularly on Ubuntu, then you may want to update your installation. 

Details of the problem are on the bitbucket issue tracker:

https://bitbucket.org/tmidas/midas/issues/132/corruption-of-char-in-mjsonrpccxx

Hi Folks,

In last year's updates to MIDAS, the MIDAS sequencer has been broken out as a
separate program (rather than running as part of mhttpd).  We hope that this
change will make the sequencer operation more stable.

Before anyone gets too used to using the new sequencer program, I would like to
rename it.  Currently the program is called 'sequencer'; I would like to rename
it 'msequencer', to make it consistent with most other MIDAS programs.  If you
object to making this change, please say so in the next two weeks.

Documentation on the MIDAS sequencer can be found on the wiki:

https://midas.triumf.ca/MidasWiki/index.php/Sequencer

Note that there are still some tweaks that need to be made to the sequencer
webpage and mhttpd in order to handle this new sequencer program.

Cheers,
Thomas

It appears I needed to read the documentation more closely - the method db_save
does respect key-name capitalization and solves my problem.

Is db_save considered a deprecated method?  If so, I'd reiterate my suggestion for
a capitalize-preserve option for db_get_values.

Otherwise, I'll plan on using db_save.

> I'd like to use the mjsonrpc db_get_values method, but (as indicated in the
> documentation) it returns all ODB keys as lowercase.
> 
> This breaks quite a lot of my code - it was written with the old AJAX commands,
> and these did respect the capitalization of the ODB keys.
> 
> Would it be possible to add a capitalization-preserve option to db_get_values? 

I'd like to use the mjsonrpc db_get_values method, but (as indicated in the
documentation) it returns all ODB keys as lowercase.

This breaks quite a lot of my code - it was written with the old AJAX commands,
and these did respect the capitalization of the ODB keys.

Would it be possible to add a capitalization-preserve option to db_get_values? 

> > In any case, IMO, mhttpd has no business serving the contents of /root,
> > or serving any files outside of the mhttpd user $HOME directory. (but also
> > should not serve files from ~user/.ssh, or any other "secret" files, good
> > luck making a complete axhuastive list of all secret files that should not be
> > served).
> 
> I fully agree with Konstantin. mhttpd should only serve files under certain directories. One is the 
> midas/resources directory, another is the one defined in the ODB under /Custom/Path. I plan to modify 
> mhttpd to only serve these files (and also prevent tricks like putting "../../../" into the URL). This will then 
> also fix Andreas' problem.
> 
> Stefan

Yes, I think this is a good idea as well. But just to make sure that you get the problem: it's not the custom page call by itself! If you currently type e.g. <midas-server>/root it will open the ODB html-page.

> In any case, IMO, mhttpd has no business serving the contents of /root,
> or serving any files outside of the mhttpd user $HOME directory. (but also
> should not serve files from ~user/.ssh, or any other "secret" files, good
> luck making a complete axhuastive list of all secret files that should not be
> served).

I fully agree with Konstantin. mhttpd should only serve files under certain directories. One is the 
midas/resources directory, another is the one defined in the ODB under /Custom/Path. I plan to modify 
mhttpd to only serve these files (and also prevent tricks like putting "../../../" into the URL). This will then 
also fix Andreas' problem.

Stefan

> [mhttpd,ERROR] [mhttpd.cxx:563:rread,ERROR] Cannot read file '/root', read of 
> 4096 returned -1, errno 21 (Is a directory)

On some linux systems, "/root" exists, it is a directory used as the home directory 
of user "root" (~root is /root; traditional UNIX has ~root as /).

open() of a directory succeeds on some UNIX systems, on some of them,
read() also works, but on other systems one is supposed
to use opendir() and readdir().

MacOS is of course a BSD system (not SysV like Solaris, not Linux), so things
are different yet again. I think MacOS does not have a /root.

In any case, IMO, mhttpd has no business serving the contents of /root,
or serving any files outside of the mhttpd user $HOME directory. (but also
should not serve files from ~user/.ssh, or any other "secret" files, good
luck making a complete axhuastive list of all secret files that should not be
served).

K.O.


> 
> and in the browser I get a popup which tries to save a file called 'root'.
> 
> I track this down to the following: in mhttpd, interprete (line 18046) it is 
> check if a custom page file exists (ss_file_exist) and if yes, it tries to 'load' 
> it. Now, at this stage the variable dec_path contains '/root'.
> 
> Here now what goes wrong: ss_file_exist tries to open the given path, and if a 
> valid file descriptor is returned it assumes the file exists. This is not 
> perfectly correct since it also will get a valid file descriptor is path is an 
> accessible directory!
> 
> Now for whatever reason, on RHEL/Fedora '/root' will return a valid file 
> descriptor, but not on macOS and Ubuntu. Others I haven't tested. A possible fix 
> would be to check explicitly if path is a directory and if yes return 0 in 
> ss_file_exist (see attached diff).
> 
> Perhaps there is cleaner way to deal with this issue?! 

Description of the problem (starting with 61be7a1):

When starting a new experiment, creating a fresh ODB and than adding the 
directory '/Custom', the mhttpd runs into a problem on RHEL/Fedora, but not on 
Ubuntu and macOS. When trying to open the ODB from within whatever browser I get 
the following error message in the midas message queque:

[mhttpd,ERROR] [mhttpd.cxx:563:rread,ERROR] Cannot read file '/root', read of 
4096 returned -1, errno 21 (Is a directory)

and in the browser I get a popup which tries to save a file called 'root'.

I track this down to the following: in mhttpd, interprete (line 18046) it is 
check if a custom page file exists (ss_file_exist) and if yes, it tries to 'load' 
it. Now, at this stage the variable dec_path contains '/root'.

Here now what goes wrong: ss_file_exist tries to open the given path, and if a 
valid file descriptor is returned it assumes the file exists. This is not 
perfectly correct since it also will get a valid file descriptor is path is an 
accessible directory!

Now for whatever reason, on RHEL/Fedora '/root' will return a valid file 
descriptor, but not on macOS and Ubuntu. Others I haven't tested. A possible fix 
would be to check explicitly if path is a directory and if yes return 0 in 
ss_file_exist (see attached diff).

Perhaps there is cleaner way to deal with this issue?! 

> Thanks, I misunderstood the loop then. If poll_event(equipment[idx].info.source, (INT)count, TRUE); doesn`t do anything with "count", the loop becomes infinite except for the overflow 
> check. 

Well, the function poll_event() is _supposed_ to use "count" in a for loop as written in the example frontend:

   for (i = 0; i < count; i++) {
      /* poll hardware and set flag to TRUE if new event is available */
      flag = TRUE;

      if (flag)
         if (!test)
            return TRUE;
   }

where "flag = TRUE" must be replaced with the proper hardware check. This can be a VME access, a network TCP exchange with some Ethernet based hardware, or even a mutex check if the events are collected by a 
separate thread in the frontend.

The idea of having the for (i=0 ; i<count ; i++) loop _inside_ the poll_event() function and not outside is the fact that each function call to poll_event() takes time, and we want the minimal possible response time to new 
events. It might be just a micro-second, but having an experiment running at 100 Hz for one year (like Mu3e), this adds up to about one hour per year, which is a considerable amount of precious beam time.

Stefan

> > There is a small bug in the mfe.c initialization for the EQ_POLLED mode. There 
> > is a routine where the number of polls fitting in eq_info->period is counted:
> > 
> > 
> >          count = 1;
> >          do {
> >             if (display_period)
> >                printf(".");
> > 
> >             start_time = ss_millitime();
> > 
> >             poll_event(equipment[idx].info.source, (INT)count, TRUE);
> > 
> >             delta_time = ss_millitime() - start_time;
> > 
> >             ...
> > 
> >             if (delta_time > 0)
> >                count = count * eq_info->period / delta_time;
> >             else
> >                count *= 100;
> >             
> >             // avoid overflows
> >             if (count > 2147483647.0) {
> >                count = 2147483647.0;
> >                break;
> >             }
> >             
> >          } while (delta_time > eq_info->period * 1.2 || delta_time < eq_info-
> > >period * 0.8);
> > 
> > As "start_time = ss_millitime();" resets "delta_time" each time, only the 
> > "avoid overflows" addition saves the day. 
> > 
> > start_time = ss_millitime(); show be out of the loop.
> 
> Nope.
> 
> What I want is to determine how often I have to call poll_event to stay there for a certain time (usually 100ms). So I iterate "count" until I roughly get to my 100ms. Each call to 
> poll_event with a different count is a new measurement, therefore I initialize start_time before each measurement. If i do it outside the loop, and kind of incrementally increase 
> it, then the whole code inside the loop is added to the measurement which makes it (slightly) wrong.
> 
> The whole loop optimization has some background. Polling can be sow (think of talking to a device via Ethernet which can easily take milli seconds). So how often do we poll 
> before we do other things in the main look (like looking if a run has been started). If I only poll once, then the average front-end response time would be poor, because I mostly 
> look if a run has been started in the main loop. This is not effective. If I poll too often inside the poll_event loop, then the front-end does not react on run stops any more. So 
> there is some optimum, and this is set by the polling time of usually 100ms. This ensures that the front-end does optimal polling - without ANYTHING in between - for about 
> 100ms. But how can I know how often I should poll for 100 ms? As said above, polling can be very fast (reading a memory cell) or very slow (network). The the best method I 
> found is to do a calibration at the startup, and this is what the code above does. Maybe there are better ways today, but that code worked nicely in the last 25 years.
> 
> Stefan

Thanks, I misunderstood the loop then. If poll_event(equipment[idx].info.source, (INT)count, TRUE); doesn`t do anything with "count", the loop becomes infinite except for the overflow 
check. 

> There is a small bug in the mfe.c initialization for the EQ_POLLED mode. There 
> is a routine where the number of polls fitting in eq_info->period is counted:
> 
> 
>          count = 1;
>          do {
>             if (display_period)
>                printf(".");
> 
>             start_time = ss_millitime();
> 
>             poll_event(equipment[idx].info.source, (INT)count, TRUE);
> 
>             delta_time = ss_millitime() - start_time;
> 
>             ...
> 
>             if (delta_time > 0)
>                count = count * eq_info->period / delta_time;
>             else
>                count *= 100;
>             
>             // avoid overflows
>             if (count > 2147483647.0) {
>                count = 2147483647.0;
>                break;
>             }
>             
>          } while (delta_time > eq_info->period * 1.2 || delta_time < eq_info-
> >period * 0.8);
> 
> As "start_time = ss_millitime();" resets "delta_time" each time, only the 
> "avoid overflows" addition saves the day. 
> 
> start_time = ss_millitime(); show be out of the loop.

Nope.

What I want is to determine how often I have to call poll_event to stay there for a certain time (usually 100ms). So I iterate "count" until I roughly get to my 100ms. Each call to 
poll_event with a different count is a new measurement, therefore I initialize start_time before each measurement. If i do it outside the loop, and kind of incrementally increase 
it, then the whole code inside the loop is added to the measurement which makes it (slightly) wrong.

The whole loop optimization has some background. Polling can be sow (think of talking to a device via Ethernet which can easily take milli seconds). So how often do we poll 
before we do other things in the main look (like looking if a run has been started). If I only poll once, then the average front-end response time would be poor, because I mostly 
look if a run has been started in the main loop. This is not effective. If I poll too often inside the poll_event loop, then the front-end does not react on run stops any more. So 
there is some optimum, and this is set by the polling time of usually 100ms. This ensures that the front-end does optimal polling - without ANYTHING in between - for about 
100ms. But how can I know how often I should poll for 100 ms? As said above, polling can be very fast (reading a memory cell) or very slow (network). The the best method I 
found is to do a calibration at the startup, and this is what the code above does. Maybe there are better ways today, but that code worked nicely in the last 25 years.

Stefan

> Hi. Is it currently possible to automatically save the MIDAS ODB as a JSON file?
> I can do it manually in odbedit, but it looks like the only option for the
> automatic ODB save for each run is the standard .ODB format. Is there a way to
> change this?

I have the reverse question: Once we have a json file, can it be loaded again in the odb? We also use the odb as our analysis config. I don`t like .odb files in our repo, so we currently load settings in shell scripts (e.g. run dependent detector calibrations)

There is a small bug in the mfe.c initialization for the EQ_POLLED mode. There 
is a routine where the number of polls fitting in eq_info->period is counted:


         count = 1;
         do {
            if (display_period)
               printf(".");

            start_time = ss_millitime();

            poll_event(equipment[idx].info.source, (INT)count, TRUE);

            delta_time = ss_millitime() - start_time;

            ...

            if (delta_time > 0)
               count = count * eq_info->period / delta_time;
            else
               count *= 100;
            
            // avoid overflows
            if (count > 2147483647.0) {
               count = 2147483647.0;
               break;
            }
            
         } while (delta_time > eq_info->period * 1.2 || delta_time < eq_info-
>period * 0.8);

As "start_time = ss_millitime();" resets "delta_time" each time, only the 
"avoid overflows" addition saves the day. 

start_time = ss_millitime(); show be out of the loop.

We are readying a new release of midas and it is almost here except for a few buglets on the new html status page.

The current release candidate branch is "feature/midas-2017-10" and if you have problems with the older versions
of midas, I recommend that you try this release candidate to check if your problem is already fixed. If the problem
still exists, please file a bug report on this forum or on the bitbucket issue tracker
https://bitbucket.org/tmidas/midas/issues?status=new&status=open

Highlights of the new release include
- new and improved web pages done in html and javascript
- many bug fixes and improvements for json and json-rpc support, including improvements in handling of long strings in odb
- locked (protected) operation of odb, where odb shared memory is not writable outside of odb operations
- improved multithead support for odb
- fixes for odb corruption when odb becomes 100% full

For the next release we hope to switch midas from C to fully C++ (building everything with C++ already works). To support el6 we avoid use of 
c++11 language constructs.

K.O.

It has been reported that the current midas release candidate does not build on el5 linux (SL/RHEL/CentOS-5).

According to Red Hat, el5 is end-of-life, last SL 5 (SL5.11) was done in 2014, so this linux is very old. Also as it happens, I do not have access to any 
el5 machines to check if midas builds or runs (but this can be fixed).

https://www.scientificlinux.org/downloads/sl-versions/sl5/
https://access.redhat.com/support/policy/updates/errata

On the midas web page (https://midas.triumf.ca) we do not explicitly state which versions of which linux we definitely support. Most other open-
source projects only support current major linux distributions, hardly anybody supports end-of-life linuxes such as el5. Some projects do not even 
support recent linuxes still widely in use (ROOT6 does not build on stock el6 and there is no KDE5 for el7).

So back to midas. Support for different operating systems comes down to:

1) C/C++ language support. We still use el6 (GCC 4.4.7), so use of c++-11 language features should be avoided
2) operating system features support:
a) sysv semaphores (sysv shared memory no longer used, cannot be used on macos)
aa) (macos also is missing parts of the sysv semaphore api, such as "wait for lock, with timeout", we are using an ugly work-around)
b) posix shared memory with mprotect() & co
c) posix mutexes, including recursive-type mutexes (this seems to be the problem on el5)
d) bsd networking (need to migrate from select() to poll() and from gethostbyname() to getaddrinfo() & co (for IPv6 support))

Not all of these operating system functions are required for all of midas. Running mhttpd and mlogger requires
pretty much everything. Running just a frontend connected to midas through the mserver requires the least features,
just the networking is enough, I think.

Obviously we cannot support midas in perpetuity on all versions of all operating systems, once I do not have
access to a machine, I cannot even check that midas builds and that it runs the basic functions.

Instead, we could provide a "feature reduced" build of midas (makefile target) that includes "just enough" of midas
to (say) run a frontend, maybe even odbedit. We already have some provisions for this, but no obvious documented
way actually doing it.

So back to el5.

How important it is to support very old operating systems?
How many people still use el5?
How about old  versions of Ubuntu? Macos?

If you use anything older than el6, can you speak up,
(and if possible say why you cannot migrate to an up-to-date linux).

K.O.

> 
> The original idea behind the hv driver is that all voltages in the ODB and the class driver are
> positive. If you have a negative power supply, then the voltage is inverted at the device
> driver level. That's why you have MIN and MAX in the class driver.
> 

This rings a bell. I used the hv class driver to write a frontend for the L1440 mainframe (negative voltage),
on ODB it will be positive values, when writing to the device I had to add a minus sign,
and when reading back they came back negative and I had to add an fabs() in the comparison
between readback and demand.

Persons with bipolar power supplies need not apply.

K.O.

> > Currently one has to set the required flag in the ODB (e.g., /Programs/Logger/Required) to "y" for the program 
> > to appear on the "Programs page" and being able to start and stop the program easily.
> > 
> > However, if one wants to run with the "Prevent start on required progs" in /Experiment enabled, all the 
> > programs in the "Programs page" need to be running and one cannot have one of them stopped while still 
> > taking a run.
> > 
> > It would be nice to separate these two functionalities: Have a flag that makes the program appear on the 
> > "Programs page" and have a flag that controls the "Prevent start on required frogs" functionality.
> 
> I agree. All the programs should be always visible on the "programs" page, there should be /Programs/xxx/hidden to 
> hide them, and /Programs/xxx/required should be used for "Prevent start on required progs".

Konstantin, since you wrote the current "Programs" page, can you add that feature to the display (well, when you have time). I guess we 
event don't have to change the subdirectory structure (which might lead to incopatibilities), but just show a program if the "Start command" 
is non-null. If there is no start command, it does not make sense to start that program, so it can be hidden.

Stefan