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  2116   02 Mar 2021 Stefan RittInfoshortest possible sleep
Why do you need that? Periodic equipment typically runs ever ten seconds or so, meaning one can do this easily in a scheduler.

For polled equipment, you don't want to sleep at all. Because if you sleep, you might miss an event. That's why I put my poll in mfe.c into a for() loop. No 
sleep, maximum polling rate. I just double checked on my macbook air. 

- If poll is always false (no event available), the loop executes 50M times in 100ms (calibrated during startup of the frontend). That means one iteration 
takes 2ns (!). So if an event occurs, the readout is started with a 2ns overhead. No sleep can beat that. In a real world application, one has to add of course 
the VME access or so to poll for the event.

- If poll is always true, the framework generates about 700k events each second (returning jus a few bytes of event data).

So if one adds any sleep here, things can get only worse, so I don't see the point for that. Of course polling eats one kernel at 100%, but these days every 
CPU has more than one, even my 800 MHz Xilinx embedded ARM CPU (Zynq).

Best,
Stefan
  2115   02 Mar 2021 Konstantin OlchanskiInfoshortest possible sleep
since I am implementing a polled equipment, I was curious what is the smallest possible sleep time on current computers.

in current UNIX, there are 2 system calls available for sleeping: select() (with microsecond granularity) and nanosleep() (with nanosecond granularity).

So I wrote a little test program to check it out (progs/test_sleep).

First, Linux result using select(). Typical run on AMD 3700X CPU (4.1 GHz turbo boost) with Ubuntu LTS 20, linux kernel 5.8:

daq13:midas$ ./bin/test_sleep 
sleep      10 loops, 0.100000 sec per loop, 1.000000 sec total,  1003368.855 usec actual, 100336.885 usec actual per loop, oversleep 336.885 usec, 0.3%
sleep     100 loops, 0.010000 sec per loop, 1.000000 sec total,  1008512.020 usec actual, 10085.120 usec actual per loop, oversleep 85.120 usec, 0.9%
sleep    1000 loops, 0.001000 sec per loop, 1.000000 sec total,  1062137.842 usec actual, 1062.138 usec actual per loop, oversleep 62.138 usec, 6.2%
sleep   10000 loops, 0.000100 sec per loop, 1.000000 sec total,  1528650.999 usec actual, 152.865 usec actual per loop, oversleep 52.865 usec, 52.9%
sleep   99999 loops, 0.000010 sec per loop, 0.999990 sec total,  6250898.123 usec actual, 62.510 usec actual per loop, oversleep 52.510 usec, 525.1%
sleep 1000000 loops, 0.000001 sec per loop, 1.000000 sec total, 54056918.144 usec actual, 54.057 usec actual per loop, oversleep 53.057 usec, 5305.7%
sleep 1000000 loops, 0.000000 sec per loop, 0.100000 sec total,   210875.988 usec actual, 0.211 usec actual per loop, oversleep 0.111 usec, 110.9%
sleep 1000000 loops, 0.000000 sec per loop, 0.010000 sec total,   204804.897 usec actual, 0.205 usec actual per loop, oversleep 0.195 usec, 1948.0%
daq13:midas$ 

How to read this:

First line is 10 sleeps of 100 ms, for a total of 1 sec. this actually sleeps for a bit longer,
average over-sleep is 300 usec out of 100 ms is 0.3%.

Next few lines use progressively shorter sleep, 10 ms, 1 ms and 0.1 ms. over-sleep is consistently around 50-60 usec,
which I conclude to be this linux sleep granularity.

Last two lines try sleep for 0.1 usec and 0.01 usec, resulting in a zero-time sleep of select(),
so we just measure the average time cost of a linux syscall, around 200 ns in this machine.

Going to different machines:

Intel E-2236 (4.8 GHz tutboboost), Ubuntu LTS 20, linux kernel 5.8: over-sleep is 60 usec, zero-sleep is 400 ns.
Intel E-2226G (same, see arc.intel.com), CentOS-7, linux kernel 3.10: over-sleep is 60 usec, zero-sleep is 600 ns.
VME processor (2 GHz Intel T7400), Ubuntu 20, linux kernel 5.8: over-sleep is 60 usec, zero-sleep is 1700 ns.

This is pretty consistent, select() over-sleep is 60 usec on all hardware, zero-sleep tracks CPU GHz ratings.

Next, MacOS result, MacBookAir2020, MacOS 10.15.7, CPU 1.2 GHz i7-1060G7:

4ed0:midas olchansk$ ./bin/test_sleep 
sleep      10 loops, 0.100000 sec per loop, 1.000000 sec total,  1031108.856 usec actual, 103110.886 usec actual per loop, oversleep 3110.886 usec, 3.1%
sleep     100 loops, 0.010000 sec per loop, 1.000000 sec total,  1091104.984 usec actual, 10911.050 usec actual per loop, oversleep 911.050 usec, 9.1%
sleep    1000 loops, 0.001000 sec per loop, 1.000000 sec total,  1270800.829 usec actual, 1270.801 usec actual per loop, oversleep 270.801 usec, 27.1%
sleep   10000 loops, 0.000100 sec per loop, 1.000000 sec total,  1370345.116 usec actual, 137.035 usec actual per loop, oversleep 37.035 usec, 37.0%
sleep   99999 loops, 0.000010 sec per loop, 0.999990 sec total,  1706473.112 usec actual, 17.065 usec actual per loop, oversleep 7.065 usec, 70.6%
sleep 1000000 loops, 0.000001 sec per loop, 1.000000 sec total,  5150341.034 usec actual, 5.150 usec actual per loop, oversleep 4.150 usec, 415.0%
sleep 1000000 loops, 0.000000 sec per loop, 0.100000 sec total,   595654.011 usec actual, 0.596 usec actual per loop, oversleep 0.496 usec, 495.7%
sleep 1000000 loops, 0.000000 sec per loop, 0.010000 sec total,   591560.125 usec actual, 0.592 usec actual per loop, oversleep 0.582 usec, 5815.6%
4ed0:midas olchansk$ 

things are quite different here, OS is Mach microkernel with an oldish FreeBSD UNIX single-server (from NextSTEP),
so the sleep granularity is different, better than linux. zero-sleep still measures the syscall time, 600 ns on this machine.

Next we measure the same using the nansleep() syscall.

daq13:midas$ ./bin/test_sleep 
sleep      10 loops, 0.100000 sec per loop, 1.000000 sec total,  1004133.940 usec actual, 100413.394 usec actual per loop, oversleep 413.394 usec, 0.4%
sleep     100 loops, 0.010000 sec per loop, 1.000000 sec total,  1046117.067 usec actual, 10461.171 usec actual per loop, oversleep 461.171 usec, 4.6%
sleep    1000 loops, 0.001000 sec per loop, 1.000000 sec total,  1096894.979 usec actual, 1096.895 usec actual per loop, oversleep 96.895 usec, 9.7%
sleep   10000 loops, 0.000100 sec per loop, 1.000000 sec total,  1526744.843 usec actual, 152.674 usec actual per loop, oversleep 52.674 usec, 52.7%
sleep   99999 loops, 0.000010 sec per loop, 0.999990 sec total,  6250154.018 usec actual, 62.502 usec actual per loop, oversleep 52.502 usec, 525.0%
sleep 1000000 loops, 0.000001 sec per loop, 1.000000 sec total, 53344123.125 usec actual, 53.344 usec actual per loop, oversleep 52.344 usec, 5234.4%
sleep 1000000 loops, 0.000000 sec per loop, 0.100000 sec total, 52641665.936 usec actual, 52.642 usec actual per loop, oversleep 52.542 usec, 52541.7%
sleep 1000000 loops, 0.000000 sec per loop, 0.010000 sec total, 52637501.001 usec actual, 52.638 usec actual per loop, oversleep 52.628 usec, 526275.0%
daq13:midas$ 

Here everything is simple. sleep longer than 1000 usec works the same as select(), sleep for shorter than 100 usec sleeps for 52 usec, regardless of what 
we ask for.

MacOS does no better, long sleeps are same as select(), sleeps is 1 usec or less sleep for too long. no improvement over select().

4ed0:midas olchansk$ ./bin/test_sleep 
sleep      10 loops, 0.100000 sec per loop, 1.000000 sec total,  1023327.827 usec actual, 102332.783 usec actual per loop, oversleep 2332.783 usec, 2.3%
sleep     100 loops, 0.010000 sec per loop, 1.000000 sec total,  1130330.086 usec actual, 11303.301 usec actual per loop, oversleep 1303.301 usec, 13.0%
sleep    1000 loops, 0.001000 sec per loop, 1.000000 sec total,  1333846.807 usec actual, 1333.847 usec actual per loop, oversleep 333.847 usec, 33.4%
sleep   10000 loops, 0.000100 sec per loop, 1.000000 sec total,  1402330.160 usec actual, 140.233 usec actual per loop, oversleep 40.233 usec, 40.2%
sleep   99999 loops, 0.000010 sec per loop, 0.999990 sec total,  2034706.831 usec actual, 20.347 usec actual per loop, oversleep 10.347 usec, 103.5%
sleep 1000000 loops, 0.000001 sec per loop, 1.000000 sec total,  6646192.074 usec actual, 6.646 usec actual per loop, oversleep 5.646 usec, 564.6%
sleep 1000000 loops, 0.000000 sec per loop, 0.100000 sec total,  7556284.189 usec actual, 7.556 usec actual per loop, oversleep 7.456 usec, 7456.3%
sleep 1000000 loops, 0.000000 sec per loop, 0.010000 sec total, 15720005.035 usec actual, 15.720 usec actual per loop, oversleep 15.710 usec, 157100.1%
4ed0:midas olchansk$ 

On Linux, strace tells us that the actual syscall behind nanosleep() is this:
clock_nanosleep(CLOCK_REALTIME, 0, {tv_sec=0, tv_nsec=10000}, 0x7fffc159e200) = 0

Let's try it directly... result is the same.
Let's try it with CLOCK_MONOTONIC... result is the same.

The man page of clock_nanosleep() specifies that this syscall always suspends the calling thread,
so what we see here is the Linux scheduler tick size.

Bottom line.

On current linux, shortest sleep is around 100 usec both select() and nanosleep().
On MacOS, shortest sleep is down to 5 usec using select(), but I cannot tell if CPU sleeps or busy-loops.

select() is still the best syscall for sleeping.

K.O.
  2114   01 Mar 2021 Marius KoeppelForumUsing JSROOT.openFile with Midas
Hi everyone,

I am currently trying to access a ROOT file produced by manalyzer. By calling JSROOT.openFile("MIDAS_DOMAIN/outputRUN.root"). I can download the rootfile via MIDAS_DOMAIN/outputRUN.root. Using JSROOT.openFile results in an 501 error, 
since the request feature is not provided. Using a simple API and uploading outputRUN.root there worked fine (when the run finised). 

Is there a way to use JSROOT.openFile with the current analyzed root file in Midas (so during the run)? I know that one can access histograms of the THttpServer via JSON but I need to get the full root tree.

Cheers,
Marius
  2113   26 Feb 2021 Isaac Labrie BoulayBug ReportUndefined client causing issues in transition.
> So there is no error on run start anymore? To debug the stuck run stop, please use "stop -v" 
> to see where it got stuck. You can also play with the RPC timeouts (the connect timeout and 
> the response timeout), to make it get "unstuck" quicker. Definitely it should not be stuck 
> forever, it should timeout at maximum of "rpc timeout * number of clients". K.O.

You're right it does not stay stuck forever, it eventually gets unstuck. I forgot to mention this. 
I will try to play with these timeout parameters. It does not get stuck if I run my DAQ using the 
odbedit commands (start/stop). I don't know if this is relevant information that could help us 
identify the problem.

Thanks for all your help as always!

Isaac
  2112   26 Feb 2021 Lars MartinBug Reporttmfe_main.cxx missing include <signal.h>
> BTW, for production use I recommend midas from the "release" branches, unless one 
> needs a bug fix or new feature from the development branch.

Fair point. I would suggest adding that recommendation to the wiki instructions. I 
forget to add that step otherwise.
  2111   26 Feb 2021 Konstantin OlchanskiBug ReportUndefined client causing issues in transition.
So there is no error on run start anymore? To debug the stuck run stop, please use "stop -v" 
to see where it got stuck. You can also play with the RPC timeouts (the connect timeout and 
the response timeout), to make it get "unstuck" quicker. Definitely it should not be stuck 
forever, it should timeout at maximum of "rpc timeout * number of clients". K.O.
  Draft   26 Feb 2021 Isaac Labrie BoulayForumJavascript error during run transitions.
> > 
> > I have also attached a screen capture of the output.
> > 
> 
> so the error is gone?
> 
> K.O.

Hi K.O.,

No the error persists, 
  2109   26 Feb 2021 Isaac Labrie BoulayBug ReportUndefined client causing issues in transition.
> Clearly something goes wrong with the STARTABORT transition. Actually from your 
> sceenshot, it is not clear why the STARTABORT transition was initiated.
> 
> Usually it is called after some client fails the "start run" transition to inform 
> other clients that the run did not start after all. (mlogger uses this to close the 
> output file, etc).
> 
> But in the screenshot, we do not see any client fail the transition (only rootana1 
> was called, and it returned "green").
> 
> So, a puzzle. One possibility is that the transition code gets so confused
> that it does not record correct transition data to ODB, then the web page
> gets even more confused.
> 
> One way to see what happens, is to run the odbedit command "start now -v".
> 
> Can you try that? And attach all its output here?
> 
> K.O.

Thanks for getting back to me right away. I've attached two screenshots. The first one 
is the output after running "start now -v" (everything seemed to work nicely there), the 
second output is after using odbedit to stop the run with "stop". Notice that the DAQ 
never stops because it gets stuck in between transitions (You can see the run status 
being "stopping run" with the cancel transition button).

Thanks.

Isaac
Attachment 1: start_now_-v_(1).PNG
start_now_-v_(1).PNG
Attachment 2: stop.PNG
stop.PNG
  Draft   25 Feb 2021 Konstantin OlchanskiForumJavascript error during run transitions.
> 
> I have also attached a screen capture of the output.
> 

so the error is gone?


> Thanks for your help as always.
> 
> Isaac
> 
> > K.O.
> > 
> > 
> > > 
> > > Thanks for all the help!
> > > 
> > > Isaac
> > > 
> > > 
> > > 09:24:08.611 2021/02/10 [mhttpd,INFO] Executing script 
> > > "~/ANIS_20210106/scripts/start_daq.sh" from ODB "/Script/Start DAQ"
> > > 
> > > 09:24:13.833 2021/02/10 [Logger,LOG] Program Logger on host localhost started
> > > 
> > > 09:24:28.598 2021/02/10 [fevme,LOG] Program fevme on host localhost started
> > > 
> > > 09:24:33.951 2021/02/10 [mhttpd,INFO] Run #234 started
> > > 
> > > 09:26:30.970 2021/02/10 [mhttpd,ERROR] [midas.cxx:4260:cm_transition_call,ERROR] 
> > > Client "Logger" transition 2 aborted while waiting for client "fevme": 
> > > "/Runinfo/Transition in progress" was cleared
> > > 
> > > 09:26:31.015 2021/02/10 [mhttpd,ERROR] [midas.cxx:5120:cm_transition,ERROR] 
> > > transition STOP aborted: "/Runinfo/Transition in progress" was cleared
> > > 
> > > 09:27:27.270 2021/02/10 [mhttpd,ERROR] 
> > > [system.cxx:4937:ss_recv_net_command,ERROR] timeout receiving network command 
> > > header
> > > 
> > > 09:27:27.270 2021/02/10 [mhttpd,ERROR] [midas.cxx:12262:rpc_client_call,ERROR] 
> > > call to "fevme" on "localhost" RPC "rc_transition": timeout waiting for reply
  2107   25 Feb 2021 Konstantin OlchanskiForumJavascript error during run transitions.
> 
> I have also attached a screen capture of the output.
> 

so the error is gone?

K.O.
  Draft   25 Feb 2021 Konstantin OlchanskiForumJavascript error during run transitions.
> 
> I have also attached a screen capture of the output.
> 

so the error is gone?

K.O.
  2105   25 Feb 2021 Konstantin OlchanskiForumm is not defined error
> I see this mhttpd error starting MSL-script: 
> Uncaught (in promise) ReferenceError: m is not defined
> at mhttpd_message (VM2848 mhttpd.js:2304)
> at VM2848 mhttpd.js:2122

your line numbers do not line up with my copy of mhttpd.js. what version of midas 
do you run?

please give me the output of odbedit "ver" command (GIT revision, looks like this: 
IT revision:       Wed Feb 3 11:47:02 2021 -0800 - midas-2020-08-a-84-g78d18b1c on 
branch feature/midas-2020-12).

same info is in the midas "help" page (GIT revision).

to decipher the git revision string:

midas-2020-08-a-84-g78d18b1c means:
is commit 78d18b1c
which is 84 commits after git tag midas-2020-08-a

"on branch feature/midas-2020-12" confirms that I have the midas-2020-12 pre-
release version without having to do all the decoding above.

if you also have "-dirty" it means you changed something in the source code 
 and warranty is voided. (just joking! we can debug even modified midas source 
code)

K.O.
  2104   25 Feb 2021 Konstantin OlchanskiBug ReportUnexpected end-of-file
> > [mhttpd,ERROR] [history.cxx:97:xread,ERROR] Error: Unexpected end-of-file when 
> > reading file "/home/wagasci-ana/Data/online/210219.hst"

I am puzzled. We can try two things:

a) look inside the "bad" hst file, maybe we can see something. run "mhdump -L 
/home/wagasci-ana/Data/online/210219.hst". If there is anything wrong with the file, it 
will be probably at the end. You can also try to run it without "-L".

b) switch from "midas" history (.hst files) to "FILE" history (mh*.dat files), the 
"FILE" history code is newer and the file format is more robust, with luck it may 
survive whatever trouble is happening in your experiment. This is controlled in ODB 
/Logger/History/XXX/Active (set to "y/n").

c) the output of "mlogger -v" may give us some clue, it usually complains if something 
is not right with definitions of history data.

K.O.
  2103   25 Feb 2021 Konstantin OlchanskiBug ReportUndefined client causing issues in transition.
Clearly something goes wrong with the STARTABORT transition. Actually from your 
sceenshot, it is not clear why the STARTABORT transition was initiated.

Usually it is called after some client fails the "start run" transition to inform 
other clients that the run did not start after all. (mlogger uses this to close the 
output file, etc).

But in the screenshot, we do not see any client fail the transition (only rootana1 
was called, and it returned "green").

So, a puzzle. One possibility is that the transition code gets so confused
that it does not record correct transition data to ODB, then the web page
gets even more confused.

One way to see what happens, is to run the odbedit command "start now -v".

Can you try that? And attach all it's output here?

K.O.
  2102   25 Feb 2021 Konstantin OlchanskiForumTMFePollHandlerInterface timing
> Am I right in thinking that the TMFE HandlePoll function is calle once per 
> PollMidas()? And what is the difference to HandleRead()?

Actually, polled equipment is not implemented yet in TMFE, as you noted, the 
internal scheduler needs to be reworked.

Anyhow, I think with modern c++ and with threads, both "periodic" and "polled" 
equipments are not strictly necessary.

Periodic equipment is effectively this:

in a thread:
while (1) {
do stuff, read data, send events
sleep
}

Polled equipment is effectively this:

in a thread:
while (1) {
if (poll()) { read data, send events }
else { sleep for a little bit }
}

Example of such code is the "bulk" equipment in progs/fetest.cxx.

But to implement the same in a single threaded environment (eliminates
problems with data locking, race conditions, etc) and to provide additional
structure to the user code, the plan is to implement polled equipment in TMFE
frontends. (periodic equipment is already implemented).

K.O.
  2101   25 Feb 2021 Konstantin OlchanskiBug Reporttmfe_main.cxx missing include <signal.h>
> The most recent commit (b43aef648c2f8a7e710a327d0b322751ae44afea) throws this 
> compiler error:
> src/tmfe_main.cxx:39:11: error: 'SIGPIPE' was not declared in this scope
>     signal(SIGPIPE, SIG_IGN);
> 
> It's fixed by adding #include <signal.h> to that file.

"but it works just fine on my mac!"

anyhow, thank you for reporting this problem, it already fixed. the bitbucket auto-
build also caught it. I also boogered up "make remoteonly", also fixed now.

BTW, for production use I recommend midas from the "release" branches, unless one 
needs a bug fix or new feature from the development branch.

K.O.
  2100   25 Feb 2021 Lars MartinForumTMFePollHandlerInterface timing
Am I right in thinking that the TMFE HandlePoll function is calle once per 
PollMidas()? And what is the difference to HandleRead()?
  2099   25 Feb 2021 Lars MartinBug Reporttmfe_main.cxx missing include <signal.h>
The most recent commit (b43aef648c2f8a7e710a327d0b322751ae44afea) throws this 
compiler error:
src/tmfe_main.cxx:39:11: error: 'SIGPIPE' was not declared in this scope
    signal(SIGPIPE, SIG_IGN);

It's fixed by adding #include <signal.h> to that file.
  2098   25 Feb 2021 Isaac Labrie BoulayBug ReportUndefined client causing issues in transition.
Hi all,

I'm currently experiencing an issue during run transitions. It comes in the form 
of an alert saying "TypeError: Cannot read property 'length' of undefined" 
whenever I'm in the "transition" window on mhttpd. I have attached an image of 
what the transition window looks like when this happens. 

By the looks of it and by peering at the lines in transition.html where the 
error occurs, it's pretty obvious that there is some strange undefined client 
that the web page tries to access.

I don't know how to find what this client is. Is there a way to see it in the 
ODB? 

The issues happens in show_client() of transition.html (called by callback()). 
Here's the trace:

Uncaught (in promise) TypeError: Cannot read property 'length' of undefined
    at show_client (?cmd=Transition:227)
    at callback (?cmd=Transition:420)
    at ?cmd=Transition:430

Any help would be very appreciated!

Thanks so much.

Isaac
Attachment 1: error_message.PNG
error_message.PNG
Attachment 2: undefined_client.PNG
undefined_client.PNG
  2097   25 Feb 2021 Stefan RittBug Reporthistory reload
I have to reproduce the problem. Can you please send me the full link by direct email. As you know, I'm also at PSI.

Stefan
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